Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6L23_RS08055 Genome accession   NZ_CP077336
Coordinates   1734485..1736050 (-) Length   521 a.a.
NCBI ID   WP_004644918.1    Uniprot ID   N8Q3B4
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729485..1741050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08040 (I6L23_08040) gpmI 1730294..1731841 (+) 1548 WP_004644915.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L23_RS08045 (I6L23_08045) - 1731873..1733045 (+) 1173 WP_004644916.1 S41 family peptidase -
  I6L23_RS08050 (I6L23_08050) pilR 1733046..1734470 (-) 1425 WP_004644917.1 sigma-54-dependent transcriptional regulator Regulator
  I6L23_RS08055 (I6L23_08055) pilS 1734485..1736050 (-) 1566 WP_004644918.1 sensor histidine kinase Regulator
  I6L23_RS08060 (I6L23_08060) - 1736073..1736708 (-) 636 WP_004281059.1 response regulator transcription factor GacA -
  I6L23_RS08065 (I6L23_08065) - 1736928..1737989 (+) 1062 WP_004281060.1 serine hydrolase -
  I6L23_RS08070 (I6L23_08070) thrC 1738047..1739186 (-) 1140 WP_004281061.1 threonine synthase -
  I6L23_RS08075 (I6L23_08075) - 1739243..1740550 (-) 1308 WP_034605826.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59606.83 Da        Isoelectric Point: 6.2555

>NTDB_id=580860 I6L23_RS08055 WP_004644918.1 1734485..1736050(-) (pilS) [Acinetobacter lwoffii strain FDAARGOS 1393]
MAQQKNYAELNQYHLGIWYSAYRLLISTGLLLIFMLTYPELTTDYQYPQLYYYALGIGVAINTVQLFVLKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLVAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAIRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPIPIHLNDFIPLFIQEDLADIHD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=580860 I6L23_RS08055 WP_004644918.1 1734485..1736050(-) (pilS) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGGCACAACAAAAAAACTATGCTGAACTGAATCAATACCATCTCGGTATCTGGTACAGCGCTTATCGTCTGCTGATCAG
CACCGGTTTGTTGCTGATTTTTATGCTGACCTACCCCGAACTCACCACCGATTATCAATACCCGCAGCTGTATTATTATG
CACTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGTGCTGAAATGGATCAGACGCCTGATCCAGCCGCAGCTG
ATTATGATTTTCTTTAGCGATGTCTGCGTTTTAAGTTTGCTGACTTTGGCGAGCGACGGTCCTAATCTGCAAATCGGGCT
GCTGTTTGTGATTACTATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTGGTCGTCACGCTGGTTGCTGTTA
TCAGCGTAATTTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCATCACTCAGCAATATCAGTAATAGCGCCTTGCTG
GCCTTTTTATTTTTTGTGGTCTATGGCACTGGACAAATTGCCATACGCCGCTTTCAGATTCTGGAAAATCTAAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATTGAAACCGGCTATCTGGTTCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTCACCTTATCTCAGTCACAGCCAGATTTATTTGAACTGATCCATTTTGAGACACTGGAAAATGGTGAGCGCTTTCAGTT
TGAATCTCAGCAAAGTCGCTATAATATTCATGTGCAGGTGCAAAAACTGATTGTGCCACATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCGGCCAGTATT
GCCCATGAAATTCGCAACCCCCTAGCTGCCATTGTGCAAGCCAATGATTTATATCTGGACTCGGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCATCCTATACCGATTCATCTCAATGATTTTATCCCGTTATTTATCCAAGAAGATCTGGCCGATATTCATGAT
CAGATTCAATTTAATATTGATATCCCTTTGGTAATTCAGTTTGATGAAGCACAATTCCGGCAAATCCTCATTAATCTGAT
TCGTAATGCCATTCGTCACAATTCAGCAGATGCAGCCTATATTCAGCTGAATGTGCATCCCTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAGGCCTTATTGTTTAAACCCTTTTTTAGTACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q3B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.832

96.929

0.551