Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   I6L85_RS08015 Genome accession   NZ_CP077248
Coordinates   1613774..1614829 (-) Length   351 a.a.
NCBI ID   WP_111723356.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608774..1619829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS07985 (I6L85_07985) - 1609821..1610120 (-) 300 WP_008808549.1 YlxQ-related RNA-binding protein -
  I6L85_RS07990 (I6L85_07990) - 1610113..1610409 (-) 297 WP_008808548.1 YlxR family protein -
  I6L85_RS07995 (I6L85_07995) nusA 1610420..1611661 (-) 1242 WP_111723360.1 transcription termination factor NusA -
  I6L85_RS08000 (I6L85_08000) rimP 1611707..1612195 (-) 489 WP_111723359.1 ribosome maturation factor RimP -
  I6L85_RS08005 (I6L85_08005) trmB 1612307..1612942 (-) 636 WP_111723358.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6L85_RS08010 (I6L85_08010) ccrZ 1612939..1613733 (-) 795 WP_111723357.1 cell cycle regulator CcrZ -
  I6L85_RS08015 (I6L85_08015) pptB 1613774..1614829 (-) 1056 WP_111723356.1 ABC transporter permease Regulator
  I6L85_RS08020 (I6L85_08020) pptA 1614826..1615557 (-) 732 WP_111723355.1 ABC transporter ATP-binding protein Regulator
  I6L85_RS08025 (I6L85_08025) - 1615696..1616112 (+) 417 WP_111723354.1 HIT family protein -
  I6L85_RS08030 (I6L85_08030) - 1616123..1616425 (+) 303 WP_111723353.1 hypothetical protein -
  I6L85_RS08035 (I6L85_08035) - 1616475..1617686 (-) 1212 WP_045505870.1 LCP family protein -
  I6L85_RS08040 (I6L85_08040) - 1617693..1618217 (-) 525 WP_060552974.1 GNAT family N-acetyltransferase -
  I6L85_RS08045 (I6L85_08045) tsaE 1618217..1618663 (-) 447 WP_111723352.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 41269.76 Da        Isoelectric Point: 10.3118

>NTDB_id=580291 I6L85_RS08015 WP_111723356.1 1613774..1614829(-) (pptB) [Streptococcus gordonii strain FDAARGOS 1455]
MREVFAKRKLDFRNQCVKYLRYVLNDHFVLFLMVFLGFTAVQYSQLLRNFPKNHLPIWLALVLLSLGLVFMGRIATYLEK
PDSLFLLAKEEEVRVYVGKQRRNSFILWGFLQTLALLLLAPLFLALGVPIWGFTLYCLFLFALKVLVFQWKSKKFYLQEG
LDWKSLIAYEERRKQRILQFFALFTNVKGISSSVKRRAYLDFLTNRLSKNQEKVWDNLFLRSYLRNGDFFALSLRLLILS
LLIIIFLPQSMIATIFVGLFQYLLLFQLLALYDAYDYQYLIKLFPLEESAKVKGAKRVITSIGAVILLVELLAALLFFKE
KIMVLFILLVYLILYAVYLPYKLKGLVDERA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=580291 I6L85_RS08015 WP_111723356.1 1613774..1614829(-) (pptB) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAGAGAAGTATTTGCTAAGCGCAAACTGGATTTTCGGAATCAGTGTGTCAAATATCTGCGCTATGTTTTGAATGACCA
CTTTGTTCTATTTTTAATGGTTTTCTTGGGTTTTACAGCGGTTCAATACAGCCAGTTGCTTCGCAATTTTCCTAAGAATC
ATTTGCCTATCTGGCTAGCCTTAGTCCTCCTATCACTGGGCTTGGTTTTTATGGGCAGGATTGCTACTTATCTTGAAAAG
CCAGATAGCCTCTTTCTTTTGGCTAAGGAAGAAGAAGTACGTGTCTATGTCGGCAAACAAAGGCGAAATTCTTTTATTCT
TTGGGGATTTTTGCAAACCTTGGCTTTGCTTCTGTTGGCTCCTCTTTTTCTAGCCTTAGGTGTGCCTATCTGGGGCTTTA
CTCTATATTGTTTGTTCCTATTTGCTTTGAAAGTTTTGGTATTTCAATGGAAAAGTAAGAAATTCTATTTGCAGGAAGGG
CTTGATTGGAAGTCTCTAATTGCCTACGAAGAGAGACGTAAACAGCGAATTTTGCAATTTTTTGCTCTCTTTACGAATGT
TAAGGGAATATCAAGTAGCGTAAAAAGACGAGCTTATTTAGATTTCTTGACCAACCGCCTGTCCAAGAACCAAGAGAAAG
TTTGGGACAATCTCTTCTTGCGCTCTTATTTGAGAAATGGGGACTTTTTTGCTCTTAGTCTACGTTTGTTAATTTTATCA
TTGCTGATTATTATTTTTCTACCTCAAAGCATGATTGCAACAATCTTTGTCGGTCTTTTTCAGTACCTCTTGCTCTTTCA
GCTTCTAGCCTTGTATGACGCTTATGATTATCAATATTTAATCAAACTCTTCCCTCTAGAGGAAAGTGCAAAGGTAAAAG
GAGCTAAACGAGTTATCACTAGCATTGGGGCAGTCATATTGCTCGTAGAATTATTGGCAGCTCTGCTATTCTTTAAAGAA
AAAATAATGGTCCTTTTTATCTTGCTTGTATACCTGATACTTTACGCAGTTTATCTACCTTACAAGCTTAAAGGATTGGT
TGACGAAAGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

49.138

99.145

0.487
  pptB Streptococcus thermophilus LMD-9

48.851

99.145

0.484