Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L29_RS07490 Genome accession   NZ_CP077238
Coordinates   1595637..1596017 (-) Length   126 a.a.
NCBI ID   WP_005069533.1    Uniprot ID   A0A022IXP4
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590637..1601017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS07460 (I6L29_07460) tadA 1590701..1591204 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  I6L29_RS07465 (I6L29_07465) hibch 1591210..1592334 (-) 1125 WP_016803061.1 enoyl-CoA hydratase/isomerase family protein -
  I6L29_RS07470 (I6L29_07470) ung 1592331..1593044 (-) 714 WP_002121342.1 uracil-DNA glycosylase -
  I6L29_RS07475 (I6L29_07475) - 1593098..1593694 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L29_RS07480 (I6L29_07480) gspK 1593922..1594881 (-) 960 WP_005076277.1 type II secretion system minor pseudopilin GspK -
  I6L29_RS07485 (I6L29_07485) xcpW 1594882..1595637 (-) 756 WP_005069530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L29_RS07490 (I6L29_07490) xcpV 1595637..1596017 (-) 381 WP_005069533.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L29_RS07495 (I6L29_07495) - 1596007..1596561 (-) 555 WP_005069534.1 type II secretion system protein -
  I6L29_RS07500 (I6L29_07500) - 1596568..1597176 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  I6L29_RS07505 (I6L29_07505) ycfH 1597213..1597986 (-) 774 WP_005069538.1 TatD family hydrolase -
  I6L29_RS07510 (I6L29_07510) pilZ 1598004..1598345 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  I6L29_RS07515 (I6L29_07515) holB 1598356..1599336 (-) 981 WP_002121362.1 DNA polymerase III subunit delta' -
  I6L29_RS07520 (I6L29_07520) kdsB 1599350..1600111 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13934.09 Da        Isoelectric Point: 9.4463

>NTDB_id=580163 I6L29_RS07490 WP_005069533.1 1595637..1596017(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1399]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=580163 I6L29_RS07490 WP_005069533.1 1595637..1596017(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1399]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCAATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A022IXP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944