Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L27_RS17035 Genome accession   NZ_CP077232
Coordinates   3611523..3612152 (-) Length   209 a.a.
NCBI ID   WP_216967714.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606523..3617152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS17000 (I6L27_17005) mlaE 3606853..3607629 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6L27_RS17005 (I6L27_17010) - 3607629..3608312 (+) 684 WP_016143580.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6L27_RS17010 (I6L27_17015) - 3608339..3608980 (+) 642 WP_216967712.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  I6L27_RS17015 (I6L27_17020) - 3608992..3609279 (+) 288 WP_031949442.1 STAS domain-containing protein -
  I6L27_RS17020 (I6L27_17025) - 3609352..3610365 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  I6L27_RS17025 (I6L27_17030) - 3610524..3611105 (+) 582 WP_016143577.1 TIGR00730 family Rossman fold protein -
  I6L27_RS17030 (I6L27_17035) mutT 3611120..3611521 (+) 402 WP_216967713.1 NUDIX hydrolase -
  I6L27_RS17035 (I6L27_17040) comF 3611523..3612152 (-) 630 WP_216967714.1 ComF family protein Machinery gene
  I6L27_RS17040 (I6L27_17045) recG 3612145..3614190 (-) 2046 WP_062850174.1 ATP-dependent DNA helicase RecG -
  I6L27_RS17045 (I6L27_17050) - 3614211..3615026 (+) 816 WP_216967715.1 NAD(P)H-binding protein -
  I6L27_RS17050 (I6L27_17055) - 3615106..3616089 (+) 984 WP_216967716.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24524.82 Da        Isoelectric Point: 9.9328

>NTDB_id=580099 I6L27_RS17035 WP_216967714.1 3611523..3612152(-) (comF) [Acinetobacter pittii strain FDAARGOS 1397]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFVPH
HKEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHMACLAATLKN

Nucleotide


Download         Length: 630 bp        

>NTDB_id=580099 I6L27_RS17035 WP_216967714.1 3611523..3612152(-) (comF) [Acinetobacter pittii strain FDAARGOS 1397]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTGACTATGCTTATCCAGTTAACCGAATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCTAAAGTACAAGCTATCGTACCCATGCCTATTTCCAATCAACGTTTAAT
TGAACGTGGTTTTAATCAGTCATTATTACTTGCCAATATTTTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGTTTAAACGAACATTCTCAAAAAGGTCTTTCTCGACTAGAACGTTTTGAAAATATAGAACAACAATTTGTACCTCAT
CATAAAGAGAAACGACGTTATCGCCGTGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTATTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCTATTCACATGGCTTGCCTAGCGGCAACACTAAAGAATTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

86.408

98.565

0.852
  comF Acinetobacter baumannii D1279779

85.437

98.565

0.842