Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6L27_RS11830 Genome accession   NZ_CP077232
Coordinates   2508733..2509137 (-) Length   134 a.a.
NCBI ID   WP_216967309.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2503733..2514137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS11800 (I6L27_11805) - 2503817..2504086 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  I6L27_RS11805 (I6L27_11810) rapZ 2504083..2504934 (-) 852 WP_005066272.1 RNase adapter RapZ -
  I6L27_RS11810 (I6L27_11815) panC 2504958..2505806 (-) 849 WP_031947380.1 pantoate--beta-alanine ligase -
  I6L27_RS11815 (I6L27_11820) panB 2505810..2506619 (-) 810 WP_216967307.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6L27_RS11820 (I6L27_11825) folK 2506665..2507147 (-) 483 WP_016144358.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6L27_RS11825 (I6L27_11830) pcnB 2507144..2508607 (-) 1464 WP_031947378.1 polynucleotide adenylyltransferase PcnB -
  I6L27_RS11830 (I6L27_11835) comEA 2508733..2509137 (-) 405 WP_216967309.1 ComEA family DNA-binding protein Machinery gene
  I6L27_RS11835 (I6L27_11840) mazG 2509106..2509912 (-) 807 WP_216967311.1 nucleoside triphosphate pyrophosphohydrolase -
  I6L27_RS11840 (I6L27_11845) - 2510025..2510798 (+) 774 WP_216967313.1 SDR family oxidoreductase -
  I6L27_RS11845 (I6L27_11850) relA 2510847..2513153 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15422.76 Da        Isoelectric Point: 10.4836

>NTDB_id=580068 I6L27_RS11830 WP_216967309.1 2508733..2509137(-) (comEA) [Acinetobacter pittii strain FDAARGOS 1397]
MQLSMNLWKNKHYIFIALLWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSNVSKSSAMTDSSGQIHLNQAN
LDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKKVKGIGPAIFEKNKVRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=580068 I6L27_RS11830 WP_216967309.1 2508733..2509137(-) (comEA) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAACACTATATTTTTATTGCTCTATTATGGAGCCTGATTTCATCAACCTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCGAAGCAACAGATGTATGATCAGAAGTTGAGTATGC
AGCATTCCTCTCATTCTAATGTTTCAAAAAGCTCAGCTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCTAAT
CTTGATGAGCTGCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAAAGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAAAATAAAGTGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

69.343

100

0.709
  comEA Acinetobacter baumannii D1279779

69.343

100

0.709
  comEA Acinetobacter baylyi ADP1

43.651

94.03

0.41