Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L27_RS06575 Genome accession   NZ_CP077232
Coordinates   1379644..1380024 (-) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374644..1385024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS06545 (I6L27_06550) tadA 1374646..1375149 (-) 504 WP_216968734.1 tRNA adenosine(34) deaminase TadA -
  I6L27_RS06550 (I6L27_06555) hibch 1375156..1376280 (-) 1125 WP_216968736.1 enoyl-CoA hydratase/isomerase family protein -
  I6L27_RS06555 (I6L27_06560) ung 1376277..1376990 (-) 714 WP_016145102.1 uracil-DNA glycosylase -
  I6L27_RS06560 (I6L27_06565) - 1377044..1377640 (-) 597 WP_016145101.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L27_RS06565 (I6L27_06570) gspK 1377869..1378828 (-) 960 WP_216968738.1 type II secretion system minor pseudopilin GspK -
  I6L27_RS06570 (I6L27_06575) xcpW 1378829..1379644 (-) 816 WP_216968740.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L27_RS06575 (I6L27_06580) xcpV 1379644..1380024 (-) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L27_RS06580 (I6L27_06585) - 1380014..1380568 (-) 555 WP_216968742.1 type II secretion system protein -
  I6L27_RS06585 (I6L27_06590) - 1380575..1381183 (-) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  I6L27_RS06590 (I6L27_06595) ycfH 1381220..1381993 (-) 774 WP_216968744.1 TatD family hydrolase -
  I6L27_RS06595 (I6L27_06600) pilZ 1382011..1382352 (-) 342 WP_216968746.1 PilZ domain-containing protein -
  I6L27_RS06600 (I6L27_06605) holB 1382363..1383343 (-) 981 WP_163119588.1 DNA polymerase III subunit delta' -
  I6L27_RS06605 (I6L27_06610) kdsB 1383357..1384118 (-) 762 WP_062848588.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=580061 I6L27_RS06575 WP_017482272.1 1379644..1380024(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1397]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=580061 I6L27_RS06575 WP_017482272.1 1379644..1380024(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937