Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   I6L84_RS08330 Genome accession   NZ_CP077224
Coordinates   1696890..1697945 (-) Length   351 a.a.
NCBI ID   WP_060552970.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1691890..1702945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS08300 (I6L84_08300) - 1692937..1693236 (-) 300 WP_060552969.1 YlxQ-related RNA-binding protein -
  I6L84_RS08305 (I6L84_08305) - 1693229..1693525 (-) 297 WP_008808548.1 RNase P modulator RnpM -
  I6L84_RS08310 (I6L84_08310) nusA 1693536..1694777 (-) 1242 WP_060553305.1 transcription termination factor NusA -
  I6L84_RS08315 (I6L84_08315) rimP 1694823..1695311 (-) 489 WP_012000044.1 ribosome maturation factor RimP -
  I6L84_RS08320 (I6L84_08320) trmB 1695423..1696058 (-) 636 WP_045505881.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6L84_RS08325 (I6L84_08325) ccrZ 1696055..1696849 (-) 795 WP_008808544.1 cell cycle regulator CcrZ -
  I6L84_RS08330 (I6L84_08330) pptB 1696890..1697945 (-) 1056 WP_060552970.1 ABC transporter permease Regulator
  I6L84_RS08335 (I6L84_08335) pptA 1697942..1698673 (-) 732 WP_060552971.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS08340 (I6L84_08340) - 1698812..1699228 (+) 417 WP_060552972.1 HIT family protein -
  I6L84_RS08345 (I6L84_08345) - 1699239..1699541 (+) 303 WP_008808540.1 hypothetical protein -
  I6L84_RS08350 (I6L84_08350) - 1699589..1700800 (-) 1212 WP_060552973.1 LCP family protein -
  I6L84_RS08355 (I6L84_08355) - 1700807..1701331 (-) 525 WP_060552974.1 GNAT family N-acetyltransferase -
  I6L84_RS08360 (I6L84_08360) tsaE 1701331..1701777 (-) 447 WP_060552975.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 41252.64 Da        Isoelectric Point: 10.2368

>NTDB_id=580052 I6L84_RS08330 WP_060552970.1 1696890..1697945(-) (pptB) [Streptococcus gordonii strain FDAARGOS 1454]
MREVFAKRRLDFRNQCVKYLRYVLNDHFVLFLMVFLGFTAVQYSQLLRNFPKNHLPIWLDLVLLSLGLVFMGRIATYLEK
PDSLFLLAKEEEVRVYVGKQTRNSFILWGILQTLVLLLLAPLFLALGVPIWGFALYCLFLFALKALVFQWKSRKFYLQEG
LDWKSLIAYEERRKQRILQFFALFTNVKGISSSVKRRAYLDFLTNRLSKNQEKVWDNLFLRSYLRNGDFFALSLRLLILS
LLIIIFLPQSMIATVFVGIFQYLLLFQLLALYDAYDYQYLIKLFPLEESAKVKGAKRVITSIGAVVLIVELLTALLFFKE
KIMVLFILLVYLILYAVYLPYKLKGLVDERA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=580052 I6L84_RS08330 WP_060552970.1 1696890..1697945(-) (pptB) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAGAGAAGTATTTGCTAAGCGCAGACTGGATTTTCGGAACCAGTGTGTAAAATATCTGCGCTATGTTTTGAATGACCA
CTTTGTTCTATTTTTAATGGTTTTCTTGGGTTTTACAGCGGTTCAATACAGCCAGTTGCTTCGAAATTTTCCTAAGAATC
ATTTGCCTATCTGGCTAGACTTAGTCCTCCTTTCACTGGGCTTGGTTTTTATGGGCAGGATTGCTACTTATCTTGAAAAG
CCAGATAGCCTCTTTCTTTTGGCTAAGGAAGAAGAAGTCCGTGTCTATGTCGGAAAACAAACGAGAAATTCTTTTATTCT
TTGGGGAATTTTGCAAACCTTGGTTTTGCTTCTCTTGGCACCTCTTTTTCTAGCTTTAGGTGTGCCTATATGGGGATTTG
CTCTATATTGTTTATTCCTATTTGCTTTGAAAGCTCTGGTATTTCAATGGAAAAGTCGGAAATTCTATTTGCAGGAAGGG
CTTGATTGGAAGTCTCTAATTGCCTACGAAGAGAGACGCAAACAGCGAATTTTGCAATTTTTTGCTCTCTTTACGAATGT
TAAGGGAATATCAAGTAGCGTAAAAAGACGAGCTTATTTAGATTTCTTGACCAATCGCCTGTCCAAGAATCAAGAGAAAG
TTTGGGACAATCTCTTCTTGCGCTCTTATTTGAGAAATGGGGACTTTTTTGCTCTTAGTCTACGTTTGTTGATTTTATCT
TTGCTGATCATTATTTTTCTGCCTCAAAGCATGATTGCAACAGTGTTTGTCGGTATTTTTCAGTACCTCTTGCTCTTTCA
GCTTCTAGCCTTGTATGATGCTTATGATTATCAATATTTAATCAAACTCTTCCCTCTAGAGGAAAGTGCAAAGGTAAAAG
GAGCTAAACGAGTTATCACTAGCATTGGAGCAGTCGTATTAATCGTAGAATTATTGACAGCTCTGCTATTTTTTAAAGAA
AAAATAATGGTCCTTTTTATCCTTCTTGTATACCTGATACTTTACGCAGTTTATCTGCCTTATAAGCTTAAAGGATTGGT
TGACGAAAGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(157-330)

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

50.287

99.145

0.499
  pptB Streptococcus thermophilus LMD-9

49.713

99.145

0.493