Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   MUA13_RS06310 Genome accession   NZ_CP094787
Coordinates   1299413..1300564 (+) Length   383 a.a.
NCBI ID   WP_111055819.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6168     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1294413..1305564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA13_RS06285 (MUA13_06280) yfmH 1295243..1296529 (+) 1287 WP_262522562.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MUA13_RS06290 (MUA13_06285) ymfI 1296529..1297233 (+) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  MUA13_RS06295 (MUA13_06290) - 1297338..1298165 (+) 828 WP_000214890.1 YmfK family protein -
  MUA13_RS06300 (MUA13_06295) - 1298184..1298576 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  MUA13_RS06305 (MUA13_06300) pgsA 1298610..1299188 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA13_RS06310 (MUA13_06305) cinA 1299413..1300564 (+) 1152 WP_111055819.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  MUA13_RS06315 (MUA13_06310) recA 1300729..1301772 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  MUA13_RS06320 (MUA13_06315) rny 1302126..1303685 (+) 1560 WP_001050913.1 ribonuclease Y -
  MUA13_RS06325 (MUA13_06320) - 1303982..1304197 (-) 216 WP_000026308.1 hypothetical protein -
  MUA13_RS06330 (MUA13_06325) - 1304371..1305168 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43251.59 Da        Isoelectric Point: 6.3213

>NTDB_id=579847 MUA13_RS06310 WP_111055819.1 1299413..1300564(+) (cinA) [Staphylococcus aureus strain IVB6168]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNEKFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=579847 MUA13_RS06310 WP_111055819.1 1299413..1300564(+) (cinA) [Staphylococcus aureus strain IVB6168]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAAGTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433