Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L49_RS17620 Genome accession   NZ_CP077209
Coordinates   3857262..3858701 (+) Length   479 a.a.
NCBI ID   WP_216950034.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1419     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3852262..3863701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L49_RS17590 (I6L49_17590) mlaF 3852839..3853639 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L49_RS17595 (I6L49_17595) - 3853847..3854842 (+) 996 WP_058057518.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L49_RS17600 (I6L49_17600) kdsC 3854842..3855396 (+) 555 WP_005336340.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L49_RS17605 (I6L49_17605) lptC 3855393..3855953 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  I6L49_RS17610 (I6L49_17610) lptA 3855940..3856467 (+) 528 WP_026034862.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L49_RS17615 (I6L49_17615) lptB 3856471..3857196 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  I6L49_RS17620 (I6L49_17620) rpoN/rpoN1 3857262..3858701 (+) 1440 WP_216950034.1 RNA polymerase factor sigma-54 Machinery gene
  I6L49_RS17625 (I6L49_17625) hpf 3858722..3859009 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  I6L49_RS17630 (I6L49_17630) ptsN 3859012..3859458 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L49_RS17635 (I6L49_17635) rapZ 3859504..3860370 (+) 867 WP_005336320.1 RNase adapter RapZ -
  I6L49_RS17640 (I6L49_17640) npr 3860391..3860663 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  I6L49_RS17645 (I6L49_17645) - 3860681..3862585 (-) 1905 WP_139732709.1 transcription antiterminator -
  I6L49_RS17650 (I6L49_17650) - 3862692..3863432 (-) 741 WP_216950035.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53727.72 Da        Isoelectric Point: 4.3442

>NTDB_id=579848 I6L49_RS17620 WP_216950034.1 3857262..3858701(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1419]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGIKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=579848 I6L49_RS17620 WP_216950034.1 3857262..3858701(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1419]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCTATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAGCTCGATGAGGTAGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGTATTGCAGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCATCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATCCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491