Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L28_RS12935 Genome accession   NZ_CP077205
Coordinates   2761950..2762330 (-) Length   126 a.a.
NCBI ID   WP_031948175.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2756950..2767330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS12905 (I6L28_12905) tadA 2757070..2757573 (-) 504 WP_057106324.1 tRNA adenosine(34) deaminase TadA -
  I6L28_RS12910 (I6L28_12910) hibch 2757580..2758704 (-) 1125 WP_216946202.1 enoyl-CoA hydratase/isomerase family protein -
  I6L28_RS12915 (I6L28_12915) ung 2758701..2759414 (-) 714 WP_016145102.1 uracil-DNA glycosylase -
  I6L28_RS12920 (I6L28_12920) - 2759468..2760064 (-) 597 WP_174729142.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L28_RS12925 (I6L28_12925) gspK 2760293..2761252 (-) 960 WP_216946203.1 type II secretion system minor pseudopilin GspK -
  I6L28_RS12930 (I6L28_12930) xcpW 2761252..2761950 (-) 699 WP_216946204.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L28_RS12935 (I6L28_12935) xcpV 2761950..2762330 (-) 381 WP_031948175.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L28_RS12940 (I6L28_12940) - 2762320..2762874 (-) 555 WP_057106321.1 type II secretion system protein -
  I6L28_RS12945 (I6L28_12945) - 2762881..2763489 (-) 609 WP_014206595.1 TetR/AcrR family transcriptional regulator -
  I6L28_RS12950 (I6L28_12950) ycfH 2763526..2764299 (-) 774 WP_216946205.1 TatD family hydrolase -
  I6L28_RS12955 (I6L28_12955) pilZ 2764317..2764658 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  I6L28_RS12960 (I6L28_12960) holB 2764669..2765649 (-) 981 WP_216946206.1 DNA polymerase III subunit delta' -
  I6L28_RS12965 (I6L28_12965) kdsB 2765663..2766424 (-) 762 WP_216946207.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=579798 I6L28_RS12935 WP_031948175.1 2761950..2762330(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1398]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKIQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=579798 I6L28_RS12935 WP_031948175.1 2761950..2762330(-) (xcpV) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGCTAACTAA
AGTAGCCATGCAGTACACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAGTGGCTTGAAGGTACGCAAAGCAAGCAGGTTACTTCCCAAGGTGAAACTTGGCAGATT
GATAAATCTGCACAATCCACAATTAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAATTCAAAATGGTATTACTCACTTAGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937