Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6L28_RS05245 Genome accession   NZ_CP077205
Coordinates   1099334..1099963 (-) Length   209 a.a.
NCBI ID   WP_216947024.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1094334..1104963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS05210 (I6L28_05210) mlaE 1094660..1095436 (+) 777 WP_125697970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6L28_RS05215 (I6L28_05215) - 1095436..1096119 (+) 684 WP_125697968.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6L28_RS05220 (I6L28_05220) - 1096150..1096791 (+) 642 WP_002116826.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  I6L28_RS05225 (I6L28_05225) - 1096803..1097090 (+) 288 WP_216947023.1 STAS domain-containing protein -
  I6L28_RS05230 (I6L28_05230) - 1097163..1098176 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  I6L28_RS05235 (I6L28_05235) - 1098335..1098916 (+) 582 WP_016143577.1 TIGR00730 family Rossman fold protein -
  I6L28_RS05240 (I6L28_05240) mutT 1098931..1099332 (+) 402 WP_125697966.1 NUDIX hydrolase -
  I6L28_RS05245 (I6L28_05245) comF 1099334..1099963 (-) 630 WP_216947024.1 ComF family protein Machinery gene
  I6L28_RS05250 (I6L28_05250) recG 1099956..1102001 (-) 2046 WP_031949437.1 ATP-dependent DNA helicase RecG -
  I6L28_RS05255 (I6L28_05255) - 1102022..1102837 (+) 816 WP_216947025.1 NAD-dependent epimerase/dehydratase family protein -
  I6L28_RS05260 (I6L28_05260) - 1102917..1103900 (+) 984 WP_182002865.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24477.70 Da        Isoelectric Point: 9.9656

>NTDB_id=579789 I6L28_RS05245 WP_216947024.1 1099334..1099963(-) (comF) [Acinetobacter pittii strain FDAARGOS 1398]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLQQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLRIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HKEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=579789 I6L28_RS05245 WP_216947024.1 1099334..1099963(-) (comF) [Acinetobacter pittii strain FDAARGOS 1398]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTCAACAAACGATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCAGTTAATCGGATCATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAAACACTTAAGAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAGCACTCTCAAAAAGGGCTTACTCGACTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATAAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

82.297

100

0.823
  comF Acinetobacter baumannii D1279779

81.34

100

0.813