Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6L28_RS01875 Genome accession   NZ_CP077205
Coordinates   392230..393798 (+) Length   522 a.a.
NCBI ID   WP_216946757.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 387230..398798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS01855 (I6L28_01855) hom 387715..389016 (+) 1302 WP_016142448.1 homoserine dehydrogenase -
  I6L28_RS01860 (I6L28_01860) thrC 389071..390210 (+) 1140 WP_216946756.1 threonine synthase -
  I6L28_RS01865 (I6L28_01865) pbpG 390325..391371 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L28_RS01870 (I6L28_01870) gacA 391584..392219 (+) 636 WP_002121174.1 response regulator -
  I6L28_RS01875 (I6L28_01875) pilS 392230..393798 (+) 1569 WP_216946757.1 sensor histidine kinase Regulator
  I6L28_RS01880 (I6L28_01880) pilR 393822..395234 (+) 1413 WP_216946758.1 sigma-54-dependent transcriptional regulator Regulator
  I6L28_RS01885 (I6L28_01885) ctpA 395238..396422 (-) 1185 WP_151748533.1 S41 family peptidase -
  I6L28_RS01890 (I6L28_01890) gpmI 396438..397985 (-) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59052.63 Da        Isoelectric Point: 6.4379

>NTDB_id=579768 I6L28_RS01875 WP_216946757.1 392230..393798(+) (pilS) [Acinetobacter pittii strain FDAARGOS 1398]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATKQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLVITLLAVIAVIYQHFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYNIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKILFDEKQFRQVLINLVRNALRHNAPDSPHILINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=579768 I6L28_RS01875 WP_216946757.1 392230..393798(+) (pilS) [Acinetobacter pittii strain FDAARGOS 1398]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTTAAGTTTATTGCCACTCAGGCAACAAAGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATTTACAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCAGCAATTTTACTTAGCGCAAGAATGTCGCTGGTCATTACATTACTTGCAG
TTATTGCGGTTATTTACCAACACTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTCGTAGTACACGGCATCGGGCAAATTGCGGTCCAGCGCTTTAAGTTACTTGAGGCGCTGACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACAACATTGTTTTAAGCAACCCAGCAGCATGTTCACTTTTGGGGATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCTAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAATCTAAAAGAAGGTGATCGTTTTAT
TTTTGAGTCTCGGCTTTCGGCCTACTCTATTAATATTAAAGTGCAGCATCTTTTAGTACCACAACAAGCGTTGACGCTAC
TCATTTTACAAGATGCGCAGCAAATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTAGGGCAACTGTCAGCAAGT
ATTGCCCATGAAATTCGTAATCCTCTTGCAGCGATTGTGCAAGCAAATGAACTACTTAAAGACAGTGATTTAGAACAACA
AAATACTTTACGCAATATGATTGGCAAGCAAACCAAACGCATTGATAGTATTGTTCAAGACACGTTAGGGCTTGCCCGTA
GTGAAAGAACATATCCAATCCAGATTGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGCTCTGATTTATCTTTAAAGATATTGTTTGATGAAAAGCAGTTCAGACAAGTGCTGATTAA
CCTAGTTAGAAATGCTTTACGACACAATGCACCCGACTCGCCACATATCTTGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.678

100

0.937