Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I6L28_RS01880 Genome accession   NZ_CP077205
Coordinates   393822..395234 (+) Length   470 a.a.
NCBI ID   WP_216946758.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 388822..400234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS01860 (I6L28_01860) thrC 389071..390210 (+) 1140 WP_216946756.1 threonine synthase -
  I6L28_RS01865 (I6L28_01865) pbpG 390325..391371 (-) 1047 WP_016144106.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L28_RS01870 (I6L28_01870) gacA 391584..392219 (+) 636 WP_002121174.1 response regulator -
  I6L28_RS01875 (I6L28_01875) pilS 392230..393798 (+) 1569 WP_216946757.1 sensor histidine kinase Regulator
  I6L28_RS01880 (I6L28_01880) pilR 393822..395234 (+) 1413 WP_216946758.1 sigma-54-dependent transcriptional regulator Regulator
  I6L28_RS01885 (I6L28_01885) ctpA 395238..396422 (-) 1185 WP_151748533.1 S41 family peptidase -
  I6L28_RS01890 (I6L28_01890) gpmI 396438..397985 (-) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6L28_RS01895 (I6L28_01895) lptG 398112..399182 (-) 1071 WP_016144101.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52712.88 Da        Isoelectric Point: 6.4520

>NTDB_id=579769 I6L28_RS01880 WP_216946758.1 393822..395234(+) (pilR) [Acinetobacter pittii strain FDAARGOS 1398]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIQTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALKQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSTHGGSLFLDE
IAELPLTMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDVLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISNKQLTASAETYLLQQDFPGNVRELRNMIERAITLSEDECIDLTHLAPPLRASSASPQIVTKQLN
QTPTVLTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=579769 I6L28_RS01880 WP_216946758.1 393822..395234(+) (pilR) [Acinetobacter pittii strain FDAARGOS 1398]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTCAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCCCACACCCCCATT
GCAGTTTTAACTGCATACGGAAATATGGACATTGCAATTGCTGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCATTTAGATCAGTTGTTAAAAAAGGCGCTTAAACAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGAACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCGCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTGGTTGCCAATCTTATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGGAGCTTTACTGGCGCGACTCAAGACAAACAAGGTCTTATTTTATCGACACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCGTTAACTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAAATTCGCCCAGTAGGTTCTGA
TCAGGAAATTGATGTTGATTTTCGAGTAATTAGTGCGAGTCACCAAGATTTAGATGTGTTAGTCCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGCGGTGGAGATATTTTGCTA
TTGGCCAACCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAACAAGCAATTAACGGCGAGTGCTGAAACTTA
TTTATTACAGCAAGACTTTCCGGGTAATGTGCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGAGGATG
AATGTATTGATTTAACACATTTAGCACCTCCCCTGAGAGCTAGTAGTGCGAGCCCCCAAATCGTAACGAAACAATTAAAT
CAAACACCGACTGTTCTGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCATTAAATATGACGCATTGGAATCGAACTTTGGCAGCTAAAAAGCTAGGAATGACATTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGTTTGGATACCGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.201

100

0.857
  pilR Pseudomonas aeruginosa PAK

50.877

97.021

0.494