Detailed information NTG0579739

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6L32_RS04670
• Genome accession: NZ_CP077201
• Coordinates: 975988..976863 (+)
• Length: 291 a.a.
• NCBI ID: WP_201921354.1
• Uniprot ID: -
• Organism: Aeromonas sp. FDAARGOS 1402
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 970988..981863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L32_RS04650 (I6L32_04650)	nadC	971218..972081 (+)	864	WP_042864860.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6L32_RS04655 (I6L32_04655)	-	972392..972835 (+)	444	WP_080988740.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I6L32_RS04660 (I6L32_04660)	pilB	972835..974541 (+)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6L32_RS04665 (I6L32_04665)	pilC	974669..975910 (+)	1242	WP_216944752.1	type II secretion system F family protein	Machinery gene
I6L32_RS04670 (I6L32_04670)	pilD	975988..976863 (+)	876	WP_201921354.1	A24 family peptidase	Machinery gene
I6L32_RS04675 (I6L32_04675)	coaE	976882..977496 (+)	615	WP_201921352.1	dephospho-CoA kinase	-
I6L32_RS04680 (I6L32_04680)	zapD	977534..978256 (+)	723	WP_010675825.1	cell division protein ZapD	-
I6L32_RS04685 (I6L32_04685)	yacG	978267..978461 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
I6L32_RS04690 (I6L32_04690)	mutT	978517..978921 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
I6L32_RS04695 (I6L32_04695)	-	978930..980114 (-)	1185	WP_216944753.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32027.12 Da
• Isoelectric Point: 6.8280

>NTDB_id=579739 I6L32_RS04670 WP_201921354.1 975988..976863(+) (pilD) [Aeromonas sp. FDAARGOS 1402]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHASISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=579739 I6L32_RS04670 WP_201921354.1 975988..976863(+) (pilD) [Aeromonas sp. FDAARGOS 1402]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCTCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTGGGATGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.552	99.656	0.564
pilD	Acinetobacter baumannii D1279779	51.613	95.876	0.495
pilD	Acinetobacter nosocomialis M2	51.613	95.876	0.495
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46