Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPN994039_RS08905 Genome accession   NC_021005
Coordinates   1667246..1667956 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae SPN994039     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662246..1672956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994039_RS08890 (SPN994039_16470) - 1662787..1663035 (-) 249 WP_000364990.1 YneF family protein -
  SPN994039_RS08895 (SPN994039_16480) treC 1663291..1664916 (-) 1626 WP_000171215.1 alpha,alpha-phosphotrehalase -
  SPN994039_RS08900 (SPN994039_16490) treP 1665094..1667061 (-) 1968 WP_000514312.1 PTS system trehalose-specific EIIBC component -
  SPN994039_RS08905 (SPN994039_16500) treR 1667246..1667956 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPN994039_RS11855 (SPN994039_16510) - 1668111..1669446 (+) 1336 Protein_1719 ISL3 family transposase -
  SPN994039_RS08925 (SPN994039_16520) amiF 1669521..1670447 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  SPN994039_RS08930 (SPN994039_16530) amiE 1670458..1671525 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  SPN994039_RS08935 (SPN994039_16540) amiD 1671534..1672460 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=57952 SPN994039_RS08905 WP_000760673.1 1667246..1667956(+) (treR) [Streptococcus pneumoniae SPN994039]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=57952 SPN994039_RS08905 WP_000760673.1 1667246..1667956(+) (treR) [Streptococcus pneumoniae SPN994039]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment