Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KSG66_RS16830 Genome accession   NZ_CP077106
Coordinates   3407443..3408132 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DW-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402443..3413132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSG66_RS16795 (KSG66_16680) - 3402640..3403122 (-) 483 WP_032876168.1 flagellar protein FlgN -
  KSG66_RS16800 (KSG66_16685) flgM 3403137..3403403 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KSG66_RS16805 (KSG66_16690) - 3403473..3403892 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KSG66_RS16810 (KSG66_16695) comFC 3403966..3404655 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  KSG66_RS16815 (KSG66_16700) - 3404661..3404945 (-) 285 WP_003151389.1 competence protein ComFB -
  KSG66_RS16820 (KSG66_16705) comFA 3405003..3406388 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  KSG66_RS16825 (KSG66_16710) - 3406497..3407345 (-) 849 WP_032876160.1 DegV family protein -
  KSG66_RS16830 (KSG66_16715) degU 3407443..3408132 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KSG66_RS16835 (KSG66_16720) degS 3408209..3409372 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KSG66_RS16840 (KSG66_16725) - 3409595..3410242 (+) 648 WP_007614107.1 YigZ family protein -
  KSG66_RS16845 (KSG66_16730) - 3410247..3411428 (+) 1182 WP_032876157.1 LCP family protein -
  KSG66_RS16850 (KSG66_16735) - 3411527..3412603 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=579372 KSG66_RS16830 WP_003219701.1 3407443..3408132(-) (degU) [Bacillus velezensis strain DW-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=579372 KSG66_RS16830 WP_003219701.1 3407443..3408132(-) (degU) [Bacillus velezensis strain DW-7]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1