Detailed information NTG0579183

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HU772_RS03905
• Genome accession: NZ_CP077095
• Coordinates: 845381..846247 (-)
• Length: 288 a.a.
• NCBI ID: WP_186662690.1
• Uniprot ID: A0A9E6PY37
• Organism: Pseudomonas xantholysinigenes strain RW9S1A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 840381..851247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU772_RS03870 (HU772_003870)	-	840826..842121 (-)	1296	WP_186662697.1	NAD(P)/FAD-dependent oxidoreductase	-
HU772_RS03875 (HU772_003875)	-	842206..842379 (-)	174	WP_186662696.1	DUF3094 family protein	-
HU772_RS03880 (HU772_003880)	-	842512..843141 (-)	630	WP_186662695.1	DUF1780 domain-containing protein	-
HU772_RS03885 (HU772_003885)	-	843197..843628 (-)	432	WP_186662694.1	hypothetical protein	-
HU772_RS03890 (HU772_003890)	-	843739..844422 (+)	684	WP_186662693.1	energy-coupling factor ABC transporter permease	-
HU772_RS03895 (HU772_003895)	yacG	844561..844761 (-)	201	WP_186662692.1	DNA gyrase inhibitor YacG	-
HU772_RS03900 (HU772_003900)	coaE	844758..845381 (-)	624	WP_186662691.1	dephospho-CoA kinase	-
HU772_RS03905 (HU772_003905)	pilD	845381..846247 (-)	867	WP_186662690.1	A24 family peptidase	Machinery gene
HU772_RS03910 (HU772_003910)	-	846250..847459 (-)	1210	Protein_758	type II secretion system F family protein	-
HU772_RS03915 (HU772_003915)	-	847687..848097 (+)	411	WP_062575174.1	pilin	-
HU772_RS03925 (HU772_003925)	-	848585..849076 (+)	492	WP_186662603.1	hypothetical protein	-
HU772_RS03930 (HU772_003930)	-	850406..850636 (+)	231	WP_186662602.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31677.82 Da
• Isoelectric Point: 6.9399

>NTDB_id=579183 HU772_RS03905 WP_186662690.1 845381..846247(-) (pilD) [Pseudomonas xantholysinigenes strain RW9S1A]
MNAWAVIVDHPPFFYTLAAVLGLLVGSFLNVLAYRLPLMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA
WENIPVLSYLALRGRCSGCKARISARYPLVELATALLSLLVAWHFGPGVEALAVMLLTWGLIGLSLIDAEHQLLPDVLVL
PLLWLGLVVNTFELLVPLADAVWGAVAGYLSLWTVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQVLPLTLMLASLVGA
LIGLTLVRLKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=579183 HU772_RS03905 WP_186662690.1 845381..846247(-) (pilD) [Pseudomonas xantholysinigenes strain RW9S1A]
ATGAATGCCTGGGCCGTAATCGTCGATCATCCGCCGTTCTTCTATACCCTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTACCGGCTGCCGCTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAGGAGGTACTGGGGC
TGCCGCAGGCCGAGCACGAGCGTTTCGACCTGTGCCTGCCGGCGTCGCGCTGCCCCCACTGCCAGCGCCCGATCCGGGCG
TGGGAAAACATTCCGGTGTTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCGGGGTGCAAGGCGCGGATCAGTGCGCGTTA
TCCACTGGTGGAGCTGGCCACCGCCCTGCTGTCACTGCTGGTGGCGTGGCATTTCGGGCCGGGCGTGGAAGCGCTGGCGG
TGATGCTGCTGACCTGGGGGCTGATCGGCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGCTTTGGTTGGGGCTGGTGGTCAACACCTTTGAGTTGCTGGTGCCGCTGGCCGATGCGGTGTGGGGCGCGGTGGC
GGGCTACCTGAGTTTGTGGACGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGCTGTTGGCCATGCTCGGGGCCTGGGGTGGTTGGCAGGTTTTGCCGCTGACCTTGATGCTGGCCTCGCTGGTGGGAGCG
CTGATCGGGCTGACGCTGGTGCGTTTGAAGCGCACGCAAATGGGCGCTGCGTTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCTTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.396	96.528	0.535
pilD	Acinetobacter baumannii D1279779	52.768	94.097	0.497
pilD	Acinetobacter nosocomialis M2	51.661	94.097	0.486
pilD	Neisseria gonorrhoeae MS11	51.301	93.403	0.479
pilD	Vibrio campbellii strain DS40M4	49.819	96.181	0.479