Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HU718_RS26150 Genome accession   NZ_CP077089
Coordinates   5894509..5896098 (+) Length   529 a.a.
NCBI ID   WP_150706910.1    Uniprot ID   -
Organism   Pseudomonas tensinigenes strain ZA 5.3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5889509..5901098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU718_RS26130 (HU718_026130) pgeF 5891301..5892023 (-) 723 WP_186614001.1 peptidoglycan editing factor PgeF -
  HU718_RS26135 (HU718_026135) rluD 5892020..5892982 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU718_RS26140 (HU718_026140) - 5893134..5894150 (+) 1017 WP_077574589.1 outer membrane protein assembly factor BamD -
  HU718_RS26145 (HU718_026145) - 5894277..5894519 (+) 243 WP_038361669.1 PP0621 family protein -
  HU718_RS26150 (HU718_026150) pilS 5894509..5896098 (+) 1590 WP_150706910.1 ATP-binding protein Regulator
  HU718_RS26155 (HU718_026155) pilR 5896095..5897441 (+) 1347 WP_186614003.1 sigma-54 dependent transcriptional regulator Regulator
  HU718_RS26160 (HU718_026160) thiO 5897558..5898658 (-) 1101 WP_186614005.1 glycine oxidase ThiO -
  HU718_RS26165 (HU718_026165) - 5898717..5899118 (-) 402 WP_186614007.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58556.06 Da        Isoelectric Point: 6.3196

>NTDB_id=579030 HU718_RS26150 WP_150706910.1 5894509..5896098(+) (pilS) [Pseudomonas tensinigenes strain ZA 5.3]
MIAEATSADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCALFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSFNHPLNANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQSHLQGHLID
DYSTALVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFTDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579030 HU718_RS26150 WP_150706910.1 5894509..5896098(+) (pilS) [Pseudomonas tensinigenes strain ZA 5.3]
GTGATCGCTGAGGCCACCAGCGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTTTACCGTTTAAGCGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCAGCCAACGACGAATTGCTGCGCG
GTGGCAGTTGGCTGTATCTGATCCTCAACATTCTGTTGGTGGTGTTCCTTGAGAACACCCGACGGCCAGCGCAACTGTTC
AGTCTGGCCCTCGTTGATGTCCTGCTTTTATGCGCTTTGTTCTTTGCGGCGGGCGGCGTCGGCAGCGCGCTGGGCAATCT
GCTGATTGTCTCGGTGGCGATCAGCAACACCTTGCTACGGCGGCGCATCGGCCTCCTGATTGCCGCCATCGGTGCGCTGG
GCATCGTCGGTTCGAGTTTCCTGCTGAGCTTCAACCATCCGCTGAATGCCAATGAATACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCGTCGTTGCTGGTGCAGGGGTTGATCCGCCGCCTCGAAGTCAGCGAAACCCTTGCCGAGCAACG
TGCCAGTGAAGTGGTCAGCCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGTATTCTGGTGCTCGATG
AGGAGCGGCGGGTGCAACTGGCCAACCACAGCGCGCAAACCCTGCTCGCGCAATCGCACCTTCAGGGGCATCTGATCGAT
GACTATTCGACGGCGCTGGTCGATCGCCTGCAACTGTGGATGAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAACGGCCTGGAGCTGCAACCGAGCTTCATCGCCCTCGAACAGAGCCCCAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAAGCGCAGCAACTGAAACTTGCCGCACTCGGCCGCTTGACCGCCGGCATCGCCCACGAG
ATCCGCAATCCGCTCGGTGCCATCAGTCACGCCGCGCAGCTATTGGCTGAATCCGAGGAACTCGATAGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCACCACAACGGCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTCGCCGAAAGCCGTGAACAGGCCAGCGAGCGC
CAGCAGATTCATCTGCGGATCAATTCAGGAGACTTCACCACGCTGATGGACCCCAATCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAAGCCGAAGTCTGGCTGGCCCTTTTCACCGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACGCATTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597