Detailed information NTG0579031

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HU718_RS26155
• Genome accession: NZ_CP077089
• Coordinates: 5896095..5897441 (+)
• Length: 448 a.a.
• NCBI ID: WP_186614003.1
• Uniprot ID: -
• Organism: Pseudomonas tensinigenes strain ZA 5.3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5891095..5902441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU718_RS26130 (HU718_026130)	pgeF	5891301..5892023 (-)	723	WP_186614001.1	peptidoglycan editing factor PgeF	-
HU718_RS26135 (HU718_026135)	rluD	5892020..5892982 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HU718_RS26140 (HU718_026140)	-	5893134..5894150 (+)	1017	WP_077574589.1	outer membrane protein assembly factor BamD	-
HU718_RS26145 (HU718_026145)	-	5894277..5894519 (+)	243	WP_038361669.1	PP0621 family protein	-
HU718_RS26150 (HU718_026150)	pilS	5894509..5896098 (+)	1590	WP_150706910.1	ATP-binding protein	Regulator
HU718_RS26155 (HU718_026155)	pilR	5896095..5897441 (+)	1347	WP_186614003.1	sigma-54 dependent transcriptional regulator	Regulator
HU718_RS26160 (HU718_026160)	thiO	5897558..5898658 (-)	1101	WP_186614005.1	glycine oxidase ThiO	-
HU718_RS26165 (HU718_026165)	-	5898717..5899118 (-)	402	WP_186614007.1	type IV pilin protein	-
HU718_RS26170 (HU718_026170)	-	5899134..5902223 (-)	3090	WP_186614009.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50078.34 Da
• Isoelectric Point: 6.5156

>NTDB_id=579031 HU718_RS26155 WP_186614003.1 5896095..5897441(+) (pilR) [Pseudomonas tensinigenes strain ZA 5.3]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMSAAGGSFTTIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQENVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
ANMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=579031 HU718_RS26155 WP_186614003.1 5896095..5897441(+) (pilR) [Pseudomonas tensinigenes strain ZA 5.3]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGCAATCTGGCTGAAGCGCAGGCACTGCTGAACCGCGAGAGCTTCGACCTGT
GCCTGACCGACATGCGCTTGCCCGACGGTACAGGGCTGGAACTGGTGCAGCATATTCAGCAGCGTTATCCACAGCTGCCG
GTGGCGATGATTACGGCCTATGGCAGCCTGGAAACGGCAATCAACGCCTTGAAAGCCGGTGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTCACGCGCCTGCGCGAACTGGTCGGCACAGCCCTGCGGATGTCGGCGGCTGGAGGCAGTTTCACCACGA
TTGATCGACGCCTGCTCGGTGATTCGCCGCCGATGCGCAACTTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGTGGCGAATCGGGCAGTGGCAAGGAACTGGTTGCGCGCCTGATTCATGAACAGGGGCCACGCGCCGG
CCAGCCGTTCGTGCCGGTGAACTGTGGGGCAATCCCCTCGGAACTGATGGAAAGCGAGTTTTTCGGTCATCGTAAAGGCA
GCTTTACCGGCGCGGTCGAGGACAAGCCCGGGTTGTTTCAGGCCGCCAATGGCGGCACGTTGTTTCTTGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTAAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGTCAACAAGA
GAACGTGGTGGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCCGAAGTCGCGGCCGAACGCTTTCGTCAGG
ACCTTTACTACCGCCTGAACGTGATTGAATTGCGCGTGCCGCCCCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGCCTCGCCAAAGACACAGGCCAGCCGGCAGCACGCTTGCATCCGCAGGCTTTGGAAGCGCTGAA
GAATTACCGGTTTCCGGGCAATGTACGGGAGCTGGAGAACGTTCTCGAACGAGCGCACACCTTGTGTGAAAACCGCACGA
TCGAGGCGCAGGATTTGCGTCTGAGTGAAGGAAACTGCGCGGCGGATGGCGGGATTGCCGATCTGACCCAGATCGATAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGGAAGCTGATCTTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAACTCGGTTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.361	98.884	0.795
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498