Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HV782_RS24970 Genome accession   NZ_CP077087
Coordinates   5653190..5654779 (+) Length   529 a.a.
NCBI ID   WP_186747889.1    Uniprot ID   -
Organism   Pseudomonas monsensis strain PGSB 8459     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5648190..5659779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV782_RS24950 (HV782_024950) pgeF 5649981..5650703 (-) 723 WP_186747892.1 peptidoglycan editing factor PgeF -
  HV782_RS24955 (HV782_024955) rluD 5650700..5651662 (-) 963 WP_123464046.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HV782_RS24960 (HV782_024960) - 5651814..5652830 (+) 1017 WP_128616133.1 outer membrane protein assembly factor BamD -
  HV782_RS24965 (HV782_024965) - 5652958..5653200 (+) 243 WP_128616134.1 PP0621 family protein -
  HV782_RS24970 (HV782_024970) pilS 5653190..5654779 (+) 1590 WP_186747889.1 PAS domain-containing sensor histidine kinase Regulator
  HV782_RS24975 (HV782_024975) pilR 5654776..5656122 (+) 1347 WP_186747887.1 sigma-54 dependent transcriptional regulator Regulator
  HV782_RS24980 (HV782_024980) thiO 5656236..5657336 (-) 1101 WP_186747885.1 glycine oxidase ThiO -
  HV782_RS24985 (HV782_024985) - 5657394..5657795 (-) 402 WP_123464035.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58458.27 Da        Isoelectric Point: 7.1686

>NTDB_id=579002 HV782_RS24970 WP_186747889.1 5653190..5654779(+) (pilS) [Pseudomonas monsensis strain PGSB 8459]
MIAEAASAHSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFFENTRRPTQLF
TLALVDVLLLCGLFYAAGGVVSALGNLLIVSIAISNTLLRRRIGLLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAERRASEVVGLEALNALILQRMRTGILVLDGARRVQLANHSAQILLAQSHLQGHLID
DYSPALVDRLQLWMNNPTLRPQSLKIPGNGLELQASFIALDQSPNPQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQATER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHEQAEVWLALFVDPASQLAVLEVRDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQDGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=579002 HV782_RS24970 WP_186747889.1 5653190..5654779(+) (pilS) [Pseudomonas monsensis strain PGSB 8459]
GTGATCGCTGAGGCCGCCAGCGCCCACAGCAAACAGGCGCAGCGCCTGCTGCGCCTCTACCATCTCTACCGTTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTATCTGGTGCTCAACATTCTGTTGGTGGTGTTCTTTGAAAACACCCGGCGCCCGACTCAGCTGTTC
ACGCTGGCGCTGGTCGACGTGCTGTTGTTGTGCGGTTTGTTCTACGCGGCCGGCGGCGTGGTCAGTGCCCTGGGCAATCT
GCTGATCGTTTCGATCGCGATCAGCAATACCTTGCTGCGGCGGCGTATCGGCCTGCTGATCGCCGCCATTGGCGCGCTCG
GCATTGTCGGCCTGAGTTTCCTGCTCAGCTTCAGCCATCCCCTGAGCGCCAATGAATACCTGCAGGCCGGCACCCTCGGT
GCGCTGTGTTTCGCCGCCTCACTGCTGGTGCAAGGATTGATCAGGCGTCTGGAGGTCAGTGAAACCCTGGCCGAACGCCG
CGCCAGCGAAGTGGTCGGTCTCGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
GAGCGCGCCGGGTGCAACTGGCCAACCACAGCGCGCAGATCCTGCTCGCGCAATCCCATCTTCAAGGGCATCTGATCGAC
GACTATTCGCCGGCACTGGTCGATCGCCTGCAATTGTGGATGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTCGAACTGCAAGCCAGCTTCATCGCCCTGGACCAGAGCCCGAACCCACAGACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCCCAGCAACTGAAACTGGCCGCCCTCGGCCGCCTGACCGCCGGCATCTCCCACGAA
ATCCGCAATCCGCTAGGCGCCATCAGTCATGCCGCGCAGCTATTGGGGGAATCCGAGGAACTCGATGGTGCGGATCGCCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGTGCACCGCAACGCCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTTGCCGAAAGCCGCGAACAGGCCACTGAGCGT
CAGCAGATTCACTTACGGATCAATTCGGGGGACTTCACCACCCTGATGGACCCCAACCAGCTCACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGCCACAGCGCCCTGCTGCACGAACAGGCCGAGGTCTGGCTGGCCCTGTTCGTCGACCCCG
CCAGCCAGCTGGCGGTGCTCGAAGTACGGGACAACGGCCCCGGCGTCGCGCTCGATCAACAGGCACATCTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGCACCGGCCTTGGGCTTTATCTATCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCCAGTCACGCCAAGACGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.057

100

0.592