Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HV782_RS24975 Genome accession   NZ_CP077087
Coordinates   5654776..5656122 (+) Length   448 a.a.
NCBI ID   WP_186747887.1    Uniprot ID   -
Organism   Pseudomonas monsensis strain PGSB 8459     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5649776..5661122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV782_RS24950 (HV782_024950) pgeF 5649981..5650703 (-) 723 WP_186747892.1 peptidoglycan editing factor PgeF -
  HV782_RS24955 (HV782_024955) rluD 5650700..5651662 (-) 963 WP_123464046.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HV782_RS24960 (HV782_024960) - 5651814..5652830 (+) 1017 WP_128616133.1 outer membrane protein assembly factor BamD -
  HV782_RS24965 (HV782_024965) - 5652958..5653200 (+) 243 WP_128616134.1 PP0621 family protein -
  HV782_RS24970 (HV782_024970) pilS 5653190..5654779 (+) 1590 WP_186747889.1 PAS domain-containing sensor histidine kinase Regulator
  HV782_RS24975 (HV782_024975) pilR 5654776..5656122 (+) 1347 WP_186747887.1 sigma-54 dependent transcriptional regulator Regulator
  HV782_RS24980 (HV782_024980) thiO 5656236..5657336 (-) 1101 WP_186747885.1 glycine oxidase ThiO -
  HV782_RS24985 (HV782_024985) - 5657394..5657795 (-) 402 WP_123464035.1 type IV pilin protein -
  HV782_RS24990 (HV782_024990) - 5657811..5660900 (-) 3090 WP_186747883.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50103.48 Da        Isoelectric Point: 6.9010

>NTDB_id=579003 HV782_RS24975 WP_186747887.1 5654776..5656122(+) (pilR) [Pseudomonas monsensis strain PGSB 8459]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRQPFDLCLTDMRLPDGTGLDLVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPVAGGVCTSIDRRLLGDSSPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQTAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHVLKRLAKDTGQPPARLHPQALETLKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAAGGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=579003 HV782_RS24975 WP_186747887.1 5654776..5656122(+) (pilR) [Pseudomonas monsensis strain PGSB 8459]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGTAATCTCGGCGAAGCCCAGGCCCTGTTGCAGCGCCAGCCCTTCGACCTGT
GCCTGACCGATATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTACAACACATTCAGCAACGTTATCCACAGCTGCCG
GTGGCGATGATCACCGCATATGGCAGCCTCGAAACCGCAATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTCTCACCAA
ACCGGTGGACCTCACCCGCCTGCGTGAACTGGTCGGCACCGCCCTGCGCATGCCGGTGGCCGGTGGCGTGTGCACCTCGA
TTGACCGACGCCTGCTCGGCGACTCGTCGCCCATGCGCAATCTGCGCAAACAGATCGACAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGGCTGATCCACGAACAAGGCCCGCGCGCCAG
CCAGCCCTTCGTGCCGGTGAACTGCGGGGCCATTCCTTCGGAATTGATGGAGAGTGAATTCTTCGGTCACCGCAAAGGCA
GTTTTACCGGTGCGGTCGAGGACAAGCCCGGACTGTTCCAGACAGCTCACGGCGGCACATTGTTTCTCGATGAAGTGGCG
GACCTGCCGCTGTCCATGCAAGTGAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGTGGCCAACAGGA
AACCGTGGTCGATGTGCGTATTCTGTGCGCCACCCACAAGGATCTGGACGCCGAAGTGGCTGCTGAACGCTTTCGTCAGG
ATCTGTATTACCGGCTTAACGTCATCGAATTGCGCGTGCCGTCATTGCGCGAACGACGCGATGACATTGAAGTGCTGGCA
GCGCACGTGCTCAAGCGCTTGGCCAAGGACACCGGCCAACCGCCGGCGCGACTGCACCCGCAAGCGCTGGAAACCCTGAA
GAACTACCGCTTTCCGGGGAATGTGCGCGAGCTGGAAAACGTCCTCGAACGGGCGCACACCTTGTGTGAAAACCGGACGA
TCGAAGCTGAGGACTTGCGCCTGAGCGAGGGTAACTGCGCAGCGGGTGGCGCAATTGCCGACCTGACGCAAATCGACAAC
CTGGAAGATTATCTAGAGAACGTCGAACGCAAGTTGATCCTGCAGGCGCTGGAGGAGACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGCTTGAGCCTGTCGTTTCGGTCGATGCGTTACAGGTTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

98.884

0.786
  pilR Acinetobacter baumannii strain A118

49.673

100

0.509
  luxO Vibrio cholerae strain A1552

39.563

91.964

0.364