Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HV782_RS21300 Genome accession   NZ_CP077087
Coordinates   4834553..4835188 (-) Length   211 a.a.
NCBI ID   WP_123466826.1    Uniprot ID   -
Organism   Pseudomonas monsensis strain PGSB 8459     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4829553..4840188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV782_RS21265 (HV782_021265) - 4829889..4830359 (-) 471 WP_128615473.1 (2Fe-2S)-binding protein -
  HV782_RS21270 (HV782_021270) murB 4830670..4831689 (-) 1020 WP_123466816.1 UDP-N-acetylmuramate dehydrogenase -
  HV782_RS21275 (HV782_021275) - 4831686..4832150 (-) 465 WP_123466818.1 low molecular weight protein-tyrosine-phosphatase -
  HV782_RS21280 (HV782_021280) kdsB 4832150..4832914 (-) 765 WP_186744947.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HV782_RS21285 (HV782_021285) - 4832911..4833096 (-) 186 WP_003174668.1 Trm112 family protein -
  HV782_RS21290 (HV782_021290) lpxK 4833118..4834128 (-) 1011 WP_186744949.1 tetraacyldisaccharide 4'-kinase -
  HV782_RS21295 (HV782_021295) - 4834128..4834556 (-) 429 WP_123466824.1 biopolymer transporter ExbD -
  HV782_RS21300 (HV782_021300) exbB 4834553..4835188 (-) 636 WP_123466826.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HV782_RS21305 (HV782_021305) comA 4835290..4837524 (-) 2235 WP_186744951.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HV782_RS21310 (HV782_021310) - 4837661..4838179 (+) 519 WP_186744954.1 DUF2062 domain-containing protein -
  HV782_RS21315 (HV782_021315) - 4838344..4839123 (-) 780 WP_003227090.1 ABC transporter permease -
  HV782_RS21320 (HV782_021320) - 4839120..4840052 (-) 933 WP_123466834.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.01 Da        Isoelectric Point: 6.8771

>NTDB_id=578995 HV782_RS21300 WP_123466826.1 4834553..4835188(-) (exbB) [Pseudomonas monsensis strain PGSB 8459]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAGRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGERA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578995 HV782_RS21300 WP_123466826.1 4834553..4835188(-) (exbB) [Pseudomonas monsensis strain PGSB 8459]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTGTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGTGAAATCCTTGCCGCGGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGGGCGGGTGATCCACGAGCTGGAGCGCTACGT
CAACGCGCTGGGCACCATTGCTGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCATCGGTATTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834