Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA   Type   Machinery gene
Locus tag   HU759_RS18325 Genome accession   NZ_CP077082
Coordinates   4107557..4109782 (-) Length   741 a.a.
NCBI ID   WP_186617684.1    Uniprot ID   -
Organism   Pseudomonas sp. OE 28.3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4049010..4109782 4107557..4109782 within 0


Gene organization within MGE regions


Location: 4049010..4109782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU759_RS17920 (HU759_017920) - 4049010..4049540 (-) 531 WP_186617614.1 lysis system i-spanin subunit Rz -
  HU759_RS17925 (HU759_017925) - 4049537..4050070 (-) 534 WP_186617616.1 glycoside hydrolase family 19 protein -
  HU759_RS17930 (HU759_017930) - 4050128..4050682 (-) 555 WP_186617619.1 tail fiber assembly protein -
  HU759_RS29895 - 4050683..4051417 (-) 735 WP_225932997.1 hypothetical protein -
  HU759_RS17940 (HU759_017940) - 4051475..4052107 (-) 633 WP_186617621.1 hypothetical protein -
  HU759_RS17945 (HU759_017945) - 4052436..4055999 (-) 3564 WP_186617622.1 phage tail protein -
  HU759_RS17950 (HU759_017950) - 4056058..4056645 (-) 588 WP_078825112.1 tail assembly protein -
  HU759_RS17955 (HU759_017955) - 4057181..4057498 (+) 318 WP_186617624.1 hypothetical protein -
  HU759_RS17960 (HU759_017960) - 4057580..4057819 (+) 240 WP_186617625.1 hypothetical protein -
  HU759_RS17965 (HU759_017965) - 4057953..4058750 (-) 798 WP_186617626.1 C40 family peptidase -
  HU759_RS17970 (HU759_017970) - 4058753..4059505 (-) 753 WP_186617627.1 phage minor tail protein L -
  HU759_RS17975 (HU759_017975) - 4059517..4059855 (-) 339 WP_138453577.1 phage tail protein -
  HU759_RS17980 (HU759_017980) - 4059855..4062929 (-) 3075 WP_186617628.1 phage tail tape measure protein -
  HU759_RS17985 (HU759_017985) - 4062957..4063229 (-) 273 WP_186617629.1 DUF1799 domain-containing protein -
  HU759_RS17990 (HU759_017990) - 4063277..4063657 (-) 381 WP_053256732.1 phage tail assembly chaperone -
  HU759_RS17995 (HU759_017995) - 4063661..4064317 (-) 657 WP_186617630.1 phage tail protein -
  HU759_RS18000 (HU759_018000) - 4064390..4064806 (-) 417 WP_186617631.1 phage tail terminator-like protein -
  HU759_RS18005 (HU759_018005) - 4064803..4065399 (-) 597 WP_186617633.1 hypothetical protein -
  HU759_RS18010 (HU759_018010) - 4065396..4065767 (-) 372 WP_186617634.1 hypothetical protein -
  HU759_RS18015 (HU759_018015) - 4065785..4066288 (-) 504 WP_186617635.1 DnaT-like ssDNA-binding protein -
  HU759_RS18020 (HU759_018020) - 4066292..4066594 (-) 303 WP_186617636.1 HeH/LEM domain-containing protein -
  HU759_RS18025 (HU759_018025) - 4066647..4067615 (-) 969 WP_186617637.1 major capsid protein -
  HU759_RS18030 (HU759_018030) - 4067627..4068334 (-) 708 WP_128593529.1 hypothetical protein -
  HU759_RS18035 (HU759_018035) - 4068402..4068695 (-) 294 WP_186617638.1 hypothetical protein -
  HU759_RS18040 (HU759_018040) - 4068760..4069845 (-) 1086 WP_186617639.1 minor capsid protein -
  HU759_RS18045 (HU759_018045) - 4069820..4071280 (-) 1461 WP_186617640.1 DUF4055 domain-containing protein -
  HU759_RS18050 (HU759_018050) - 4071280..4072767 (-) 1488 WP_186617642.1 terminase -
  HU759_RS18055 (HU759_018055) - 4072769..4073368 (-) 600 WP_186617644.1 hypothetical protein -
  HU759_RS18060 (HU759_018060) - 4073378..4073809 (-) 432 WP_186617646.1 proteasome subunit beta -
  HU759_RS18065 (HU759_018065) - 4073920..4074243 (+) 324 WP_186617647.1 hypothetical protein -
  HU759_RS18070 (HU759_018070) - 4074304..4074648 (-) 345 WP_186617648.1 hypothetical protein -
  HU759_RS18075 (HU759_018075) - 4074645..4074983 (-) 339 WP_003218335.1 hypothetical protein -
  HU759_RS18080 (HU759_018080) - 4075108..4075620 (-) 513 WP_186617649.1 hypothetical protein -
  HU759_RS18085 (HU759_018085) - 4075629..4075820 (-) 192 WP_081214437.1 Com family DNA-binding transcriptional regulator -
  HU759_RS18090 (HU759_018090) - 4076256..4076801 (-) 546 WP_056861770.1 hypothetical protein -
  HU759_RS18095 (HU759_018095) - 4076798..4077388 (-) 591 WP_186617650.1 recombination protein NinG -
  HU759_RS18100 (HU759_018100) - 4077385..4077855 (-) 471 WP_186617651.1 hypothetical protein -
  HU759_RS18105 (HU759_018105) - 4077855..4078661 (-) 807 WP_186617652.1 ATP-binding protein -
  HU759_RS18110 (HU759_018110) - 4078651..4079508 (-) 858 WP_186617654.1 replication protein -
  HU759_RS18115 (HU759_018115) - 4079720..4079932 (-) 213 WP_178955860.1 Cro/CI family transcriptional regulator -
  HU759_RS18120 (HU759_018120) - 4080021..4080680 (+) 660 WP_186617703.1 S24 family peptidase -
  HU759_RS18125 (HU759_018125) - 4080736..4081035 (+) 300 WP_099491204.1 hypothetical protein -
  HU759_RS18130 (HU759_018130) - 4081038..4081277 (+) 240 WP_186617656.1 hypothetical protein -
  HU759_RS29900 - 4081662..4081880 (+) 219 WP_225932998.1 hypothetical protein -
  HU759_RS29905 - 4082024..4082428 (+) 405 WP_225932999.1 hypothetical protein -
  HU759_RS29910 - 4082615..4082947 (+) 333 WP_225933000.1 hypothetical protein -
  HU759_RS18140 (HU759_018140) - 4083053..4083397 (+) 345 WP_143521741.1 hypothetical protein -
  HU759_RS18145 (HU759_018145) - 4083564..4083869 (+) 306 WP_346274581.1 DUF2388 domain-containing protein -
  HU759_RS18150 (HU759_018150) - 4084113..4084364 (+) 252 WP_054898154.1 DUF1654 domain-containing protein -
  HU759_RS18155 (HU759_018155) - 4085025..4085408 (+) 384 WP_186617658.1 helix-turn-helix transcriptional regulator -
  HU759_RS18160 (HU759_018160) - 4085829..4086125 (+) 297 WP_186617659.1 hypothetical protein -
  HU759_RS18165 (HU759_018165) - 4086383..4086703 (+) 321 WP_157788666.1 hypothetical protein -
  HU759_RS18170 (HU759_018170) - 4086864..4087301 (+) 438 WP_017528179.1 hypothetical protein -
  HU759_RS18175 (HU759_018175) - 4087298..4087483 (+) 186 WP_017528180.1 hypothetical protein -
  HU759_RS18180 (HU759_018180) - 4087480..4087650 (+) 171 WP_017528181.1 hypothetical protein -
  HU759_RS18185 (HU759_018185) - 4087647..4088003 (+) 357 WP_017528182.1 hypothetical protein -
  HU759_RS18190 (HU759_018190) - 4088160..4089323 (+) 1164 WP_186617660.1 hypothetical protein -
  HU759_RS18195 (HU759_018195) - 4089331..4090146 (+) 816 WP_186617661.1 ERF family protein -
  HU759_RS18200 (HU759_018200) - 4090143..4090910 (+) 768 WP_186617662.1 lambda exonuclease family protein -
  HU759_RS18205 (HU759_018205) - 4090907..4091500 (+) 594 WP_186617664.1 hypothetical protein -
  HU759_RS18210 (HU759_018210) - 4091570..4091896 (+) 327 WP_054898958.1 hypothetical protein -
  HU759_RS18215 (HU759_018215) - 4091954..4092739 (+) 786 WP_186617666.1 methyltransferase -
  HU759_RS18220 (HU759_018220) - 4092823..4093692 (+) 870 WP_186617667.1 hypothetical protein -
  HU759_RS18225 (HU759_018225) - 4093693..4094412 (-) 720 WP_186617669.1 DUF6602 domain-containing protein -
  HU759_RS18230 (HU759_018230) - 4094489..4096537 (+) 2049 WP_186617671.1 DNA cytosine methyltransferase -
  HU759_RS18235 (HU759_018235) - 4096551..4097096 (-) 546 WP_186617673.1 hypothetical protein -
  HU759_RS18240 (HU759_018240) - 4097098..4097505 (-) 408 WP_186617675.1 hypothetical protein -
  HU759_RS18245 (HU759_018245) - 4097710..4098339 (+) 630 WP_186617677.1 hypothetical protein -
  HU759_RS18250 (HU759_018250) - 4098355..4098603 (-) 249 WP_186617679.1 Arc family DNA-binding protein -
  HU759_RS18255 (HU759_018255) - 4098792..4099103 (+) 312 WP_186617680.1 hypothetical protein -
  HU759_RS18260 (HU759_018260) - 4099108..4099715 (+) 608 Protein_3623 hypothetical protein -
  HU759_RS18265 (HU759_018265) - 4099726..4100109 (-) 384 WP_186617681.1 hypothetical protein -
  HU759_RS18270 (HU759_018270) - 4100507..4100743 (+) 237 WP_186617682.1 DUF4224 domain-containing protein -
  HU759_RS18275 (HU759_018275) - 4100748..4101812 (+) 1065 WP_186617683.1 tyrosine-type recombinase/integrase -
  HU759_RS18285 (HU759_018285) - 4102183..4102854 (+) 672 WP_058419884.1 Bax inhibitor-1/YccA family protein -
  HU759_RS18290 (HU759_018290) murB 4102927..4103946 (-) 1020 WP_017136560.1 UDP-N-acetylmuramate dehydrogenase -
  HU759_RS18295 (HU759_018295) - 4103943..4104407 (-) 465 WP_017136561.1 low molecular weight protein-tyrosine-phosphatase -
  HU759_RS18300 (HU759_018300) kdsB 4104407..4105171 (-) 765 WP_017136562.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HU759_RS18305 (HU759_018305) - 4105168..4105353 (-) 186 WP_003174668.1 Trm112 family protein -
  HU759_RS18310 (HU759_018310) lpxK 4105377..4106387 (-) 1011 WP_017136563.1 tetraacyldisaccharide 4'-kinase -
  HU759_RS18315 (HU759_018315) - 4106387..4106815 (-) 429 WP_017136564.1 biopolymer transporter ExbD -
  HU759_RS18320 (HU759_018320) exbB 4106812..4107447 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HU759_RS18325 (HU759_018325) comA 4107557..4109782 (-) 2226 WP_186617684.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence


Protein


Download         Length: 741 a.a.        Molecular weight: 80092.03 Da        Isoelectric Point: 11.0777

>NTDB_id=578866 HU759_RS18325 WP_186617684.1 4107557..4109782(-) (comA) [Pseudomonas sp. OE 28.3]
MRTGMFAFGMGLLSLRFLPALPATAWLLAMLVVALMLLPFRTYPLAFLLLGVSWACMSAQWALDDRLRPALDGQTRWVEG
RVIGLPQNTSTGVRFELTDSRSRKGRLPKRIRLSWHGGPQVNSGERWRLAVTLKRPAGLLNFQGFDYEAWLLAQRIGATG
SVKDGQRLAPARHAWRDSVRQRLLAVDAQGREAGLAALVLGDGSGLATEDWRVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARYGCWPRALPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRRLGVWWPLLLAFNAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTVLLAVPWVGEGLLWLAGGALDGLFTGLALLAGLRAAWVPADVQLGYWLISVTGAVLLLLPKGVPLRLLGWPMLLLAV
FAPKPLVPYGQVEVVQLDVGQGQAVILRTRHHAMLYDAGPRSGVVDLGARVVLPSLQKGGVAALDAMVISHAHADHAGGA
AAVARVLPVGRVIGGETEGLPAFLAAQPCNNGERWEWDGVSFELWRWPGATSSNPKSCVLQVQARGERLLLTGDIDEAAE
TAFLASPLAVPTDWLQAPHHGSRSSSSWAFLQRLAPKSVLISRGRGNAFGHPHPQVMARYQALGSRVYDSAEQGAVRVQL
GSFRAPVVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=578866 HU759_RS18325 WP_186617684.1 4107557..4109782(-) (comA) [Pseudomonas sp. OE 28.3]
ATGAGAACAGGGATGTTCGCGTTCGGAATGGGCTTGTTGTCGCTGCGATTTTTACCCGCATTGCCCGCCACCGCGTGGCT
GCTGGCCATGTTGGTAGTGGCCTTGATGTTGCTGCCGTTTCGTACCTATCCGCTGGCGTTTTTGCTGTTGGGCGTGAGCT
GGGCGTGCATGAGCGCGCAATGGGCGTTGGACGACCGATTAAGGCCGGCTCTGGACGGTCAGACTCGCTGGGTTGAGGGG
CGCGTCATCGGGTTGCCGCAAAACACCAGCACCGGCGTGCGCTTCGAACTGACCGACAGCCGGTCACGCAAGGGCCGGCT
GCCCAAGCGTATCCGGCTGTCCTGGCATGGCGGCCCGCAGGTTAACAGCGGCGAGCGCTGGCGTCTGGCGGTCACGCTCA
AGCGGCCGGCGGGCCTGCTCAATTTCCAGGGGTTTGACTACGAGGCCTGGCTGCTGGCCCAGCGCATCGGTGCCACCGGC
TCGGTGAAAGATGGCCAACGCCTGGCGCCGGCTCGCCATGCCTGGCGTGACAGCGTCCGCCAGCGCCTGCTGGCGGTGGA
TGCTCAGGGCCGCGAGGCGGGGCTGGCAGCCTTGGTGCTGGGCGACGGCTCGGGGCTGGCAACCGAGGATTGGCGGGTGT
TGCAGGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCCGGTTTGATCTACGCGCTG
GTGGCCGGGCTGGCGCGCTACGGTTGCTGGCCCCGCGCCTTGCCCTGGCTGCCGTGGGCCTGCGGCCTGGCATTTACTGC
CGCGCTGGGGTATGGCCTGCTGGCGGGGTTCGGTGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGTTGGTGCTGCTGT
GGCGTTTGCGGTTTCGCCGCTTGGGTGTGTGGTGGCCGTTATTACTGGCGTTCAATGCCGTGCTGGTGCTGGAGCCGCTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCCGCCGTGGCCGTGCTGGTGCTGGCGTTCAGCGGGCGTTTGGGCGC
GTGGAGCGTCTGGCAGGCCTGGACCCGTCCCCAATGGTTGATCGCCATCGGTTTGTTTCCGGTGCTGCTGGTGCTGGGGT
TGCCCATCAGCCTCAGTGCGCCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCGTTGGCACTG
CTGGGCACTGTACTGTTGGCGGTACCGTGGGTGGGAGAGGGCTTGTTGTGGCTGGCCGGTGGCGCGTTGGATGGCCTGTT
CACAGGCTTGGCGCTGCTGGCCGGGCTGCGCGCAGCGTGGGTGCCCGCCGACGTGCAGTTGGGTTATTGGTTGATCAGCG
TCACGGGCGCGGTGCTCTTGCTCTTGCCCAAAGGCGTGCCATTGCGGCTGCTGGGCTGGCCGATGCTGCTGTTGGCCGTC
TTTGCCCCTAAACCATTGGTGCCGTACGGGCAGGTGGAGGTGGTGCAATTGGATGTCGGCCAGGGGCAGGCGGTGATCCT
GCGCACGCGCCATCACGCCATGCTCTACGACGCAGGCCCGCGCTCGGGGGTGGTTGACCTGGGCGCGCGCGTGGTGCTGC
CATCCCTGCAAAAGGGTGGGGTGGCGGCGTTGGACGCGATGGTGATCAGCCACGCTCACGCTGACCATGCCGGCGGTGCC
GCAGCGGTTGCCCGTGTGCTGCCCGTCGGAAGGGTTATCGGCGGAGAGACCGAAGGGCTGCCGGCTTTTCTCGCCGCCCA
GCCCTGTAACAATGGCGAGCGCTGGGAGTGGGATGGCGTGTCATTCGAGTTGTGGCGATGGCCTGGCGCCACCAGCAGCA
ATCCGAAATCCTGCGTCTTGCAGGTACAGGCCCGTGGCGAGCGGTTGCTACTGACGGGTGATATTGATGAGGCGGCTGAA
ACAGCCTTTCTCGCTTCGCCCTTGGCGGTGCCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCCTCGTC
CTGGGCGTTTTTACAGCGGCTTGCGCCCAAGTCGGTGCTGATTTCCCGCGGCCGTGGCAACGCATTCGGGCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGGCGCTGGGCAGCCGGGTCTACGACAGCGCCGAGCAAGGTGCCGTGCGTGTGCAACTG
GGCAGTTTTAGAGCACCGGTTGTTGCGCGCAGTCAACGGCGATTCTGGCGCGAAGCGTTACCGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587

  comA Ralstonia pseudosolanacearum GMI1000

36.654

100

0.387