Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS97_RS08935 Genome accession   NZ_CP077080
Coordinates   2006901..2007536 (+) Length   211 a.a.
NCBI ID   WP_030137690.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain SWRI17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2001901..2012536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS97_RS08915 (KSS97_08915) - 2002023..2002955 (+) 933 WP_030137686.1 ABC transporter ATP-binding protein -
  KSS97_RS08920 (KSS97_08920) - 2002952..2003731 (+) 780 WP_030137687.1 ABC transporter permease -
  KSS97_RS08925 (KSS97_08925) - 2003898..2004413 (-) 516 WP_030137688.1 DUF2062 domain-containing protein -
  KSS97_RS08930 (KSS97_08930) comA 2004558..2006804 (+) 2247 WP_217861472.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS97_RS08935 (KSS97_08935) exbB 2006901..2007536 (+) 636 WP_030137690.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS97_RS08940 (KSS97_08940) - 2007533..2007961 (+) 429 WP_030137691.1 biopolymer transporter ExbD -
  KSS97_RS08945 (KSS97_08945) lpxK 2007961..2008971 (+) 1011 WP_030137692.1 tetraacyldisaccharide 4'-kinase -
  KSS97_RS08950 (KSS97_08950) - 2008995..2009180 (+) 186 WP_003179363.1 Trm112 family protein -
  KSS97_RS08955 (KSS97_08955) kdsB 2009177..2009941 (+) 765 WP_217861473.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS97_RS08960 (KSS97_08960) - 2009941..2010405 (+) 465 WP_030137694.1 low molecular weight protein-tyrosine-phosphatase -
  KSS97_RS08965 (KSS97_08965) murB 2010402..2011421 (+) 1020 WP_217861474.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.97 Da        Isoelectric Point: 8.0840

>NTDB_id=578803 KSS97_RS08935 WP_030137690.1 2006901..2007536(+) (exbB) [Pseudomonas alvandae strain SWRI17]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGTGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578803 KSS97_RS08935 WP_030137690.1 2006901..2007536(+) (exbB) [Pseudomonas alvandae strain SWRI17]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGTCGCGTAACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCGCTGGGAGAAATCCTTGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCGGCGGCCCGGGTCATCCATGAACTGGAGCGCTACCT
CAATGCATTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTTTGTTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTTACCGGTACCGGCATGACCACCAATGCGTCGGTGCTGGCGGGCGGTATTTCCAAGGCCTTGATCACCACCGCC
GCCGGTTTGATGGTGGGGATCCCCTCGGTGTTTTTCCATCGTTTCCTGCAGCGCCGCGTCGACGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTCCAGGGCGACCGTGATGTGGACCTGGCCGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.526

0.858