Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KSS97_RS08930 Genome accession   NZ_CP077080
Coordinates   2004558..2006804 (+) Length   748 a.a.
NCBI ID   WP_217861472.1    Uniprot ID   -
Organism   Pseudomonas alvandae strain SWRI17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999558..2011804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS97_RS08910 (KSS97_08910) - 2001265..2001888 (+) 624 WP_030137685.1 glutathione S-transferase family protein -
  KSS97_RS08915 (KSS97_08915) - 2002023..2002955 (+) 933 WP_030137686.1 ABC transporter ATP-binding protein -
  KSS97_RS08920 (KSS97_08920) - 2002952..2003731 (+) 780 WP_030137687.1 ABC transporter permease -
  KSS97_RS08925 (KSS97_08925) - 2003898..2004413 (-) 516 WP_030137688.1 DUF2062 domain-containing protein -
  KSS97_RS08930 (KSS97_08930) comA 2004558..2006804 (+) 2247 WP_217861472.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS97_RS08935 (KSS97_08935) exbB 2006901..2007536 (+) 636 WP_030137690.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS97_RS08940 (KSS97_08940) - 2007533..2007961 (+) 429 WP_030137691.1 biopolymer transporter ExbD -
  KSS97_RS08945 (KSS97_08945) lpxK 2007961..2008971 (+) 1011 WP_030137692.1 tetraacyldisaccharide 4'-kinase -
  KSS97_RS08950 (KSS97_08950) - 2008995..2009180 (+) 186 WP_003179363.1 Trm112 family protein -
  KSS97_RS08955 (KSS97_08955) kdsB 2009177..2009941 (+) 765 WP_217861473.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS97_RS08960 (KSS97_08960) - 2009941..2010405 (+) 465 WP_030137694.1 low molecular weight protein-tyrosine-phosphatase -
  KSS97_RS08965 (KSS97_08965) murB 2010402..2011421 (+) 1020 WP_217861474.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81489.79 Da        Isoelectric Point: 9.6667

>NTDB_id=578802 KSS97_RS08930 WP_217861472.1 2004558..2006804(+) (comA) [Pseudomonas alvandae strain SWRI17]
MRTVMIALALGLLVPIFLPALPPPWLIVAMAITALVMLPFRTCPASFFLLGLAWACVGAQLALDDRLPAALDGETRWVEG
NVVGLPQYGEGMVRFELADAHSRRTRLPALMRLAWYGGPPVRSGEKWRLAVKLKRPVGLLNPHGFDYESWLLSRGIGATG
TVKEGLRVQPTQGAWRDGVRQALAKVDAQGRSGALMALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLFAGLVYLL
VAGAARYGVWPARLPWLPWACALAFVAAVGYGLLAGFEVPVRRACTMIGLVLLWRWRYRQAEPWWAWLLAFIGVLMFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLIALGLCPLLLILGLPVSLSGPLVNLVAVPWISLLVLPAAL
LGTALLPVPGVGENLLWVAGGLLDLLFKGLELVAGRMAAWMPPAVPLWALCIAALGAVLLLLPKGLPLRVLGWPMLMLIV
FPPREQVPHGRAEIWHFDVGQGLAVLVRTHRHALLYDAGPRFGEADAGERVVVPTLRKLGVGRLDLMLLSHADADHAGGA
QAVRNGLATTRVISGDPDALPADLLAAPCDSGESWEWDGVRFELWRWASAVESNQKSCVLLIEADGERLLLTGDIDAHAE
RAMLDGPLGAPIHWLAAPHHGSRSSSSMALLARLKPHSVLISRGRNNAFGHPHPWVMQRYRKFGMAIHDSAEQGAIRLQL
GAFEPAHTEAGNRRYWREPPSAGPSPRH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=578802 KSS97_RS08930 WP_217861472.1 2004558..2006804(+) (comA) [Pseudomonas alvandae strain SWRI17]
ATGCGCACAGTGATGATCGCGCTCGCACTCGGGTTGCTGGTCCCGATTTTCTTACCGGCGTTGCCGCCACCGTGGCTGAT
CGTGGCGATGGCGATAACAGCGCTGGTCATGCTGCCGTTTCGCACCTGCCCGGCCAGTTTTTTTCTTCTCGGATTGGCCT
GGGCCTGCGTTGGGGCGCAGCTTGCGCTGGATGACCGGTTGCCCGCTGCCCTGGACGGTGAAACCCGCTGGGTCGAGGGA
AACGTCGTCGGTTTGCCGCAATACGGTGAGGGCATGGTGCGTTTCGAGCTTGCCGATGCCCACTCCCGACGCACGCGCTT
GCCTGCGTTGATGCGCCTGGCCTGGTATGGCGGGCCGCCGGTCAGGAGCGGTGAAAAGTGGCGCCTGGCAGTGAAGCTCA
AGCGGCCCGTCGGGTTGCTCAACCCCCATGGTTTCGACTACGAATCGTGGCTGCTGAGCCGTGGCATCGGCGCGACCGGC
ACCGTCAAGGAGGGTTTGCGGGTGCAGCCGACGCAGGGCGCTTGGCGCGATGGGGTGCGCCAGGCGTTGGCAAAGGTCGA
TGCCCAAGGGCGTTCCGGTGCGCTGATGGCGCTGGTGCTTGGCGACGGGGCTGGATTGAGCCGCGAAGATTGGCAAGTAC
TGCAAGACACCGGCACGGTCCATCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGTTTGCCGGCTTGGTGTATCTGCTG
GTGGCTGGCGCGGCGCGTTATGGCGTTTGGCCGGCGCGTCTGCCGTGGTTGCCCTGGGCCTGCGCCTTGGCTTTCGTCGC
CGCTGTGGGCTACGGCTTGCTCGCCGGATTTGAAGTGCCGGTGCGGCGGGCCTGCACGATGATCGGTCTGGTGTTGCTGT
GGCGCTGGCGTTACCGCCAAGCCGAACCTTGGTGGGCCTGGCTGCTGGCCTTCATCGGCGTGTTGATGTTCGATCCGCTG
GCGAGCCTGCGCCCCGGGTTCTGGTTGTCGTTTGCCGCCGTCGCGATATTGATGTTCACCTTCGGCGGTCGCCTGGGCCC
TTGGCGCTGGTGGCAGACCTGGACCCGAGCCCAGTGGCTGATTGCGCTCGGCCTATGCCCGTTGTTATTGATCCTTGGCT
TGCCGGTCAGCCTGAGCGGTCCGTTGGTCAACCTGGTGGCGGTGCCCTGGATCAGTTTGCTGGTATTACCGGCGGCACTG
CTTGGCACGGCGTTGCTGCCGGTTCCGGGCGTCGGGGAAAACCTGCTGTGGGTCGCCGGTGGGTTGCTCGATCTGCTGTT
CAAAGGCCTCGAACTGGTTGCAGGGCGAATGGCGGCCTGGATGCCTCCCGCTGTCCCGTTGTGGGCGCTGTGTATCGCGG
CGCTCGGCGCTGTGCTGTTGTTGCTGCCCAAGGGCCTGCCACTGCGTGTCCTGGGTTGGCCGATGTTGATGCTGATCGTG
TTTCCTCCTCGGGAACAGGTGCCCCACGGACGCGCCGAAATCTGGCATTTTGACGTCGGCCAGGGGCTGGCAGTCCTGGT
GCGTACCCATCGGCATGCGTTGCTTTATGACGCGGGGCCACGCTTTGGCGAGGCCGATGCAGGCGAGCGCGTGGTGGTTC
CGACCTTGCGCAAGCTTGGTGTGGGACGGTTGGACCTGATGCTGCTCAGCCATGCCGACGCTGATCATGCCGGCGGAGCA
CAAGCGGTGCGCAATGGGTTGGCGACGACTCGGGTCATCAGCGGCGATCCTGATGCGCTGCCCGCCGATCTGCTGGCGGC
GCCGTGCGACAGCGGCGAGAGCTGGGAATGGGATGGGGTCCGGTTCGAGCTGTGGCGCTGGGCGTCAGCGGTCGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGATCGAAGCCGACGGCGAGCGCTTGCTGTTGACCGGAGATATCGATGCCCACGCCGAG
CGAGCCATGCTCGATGGGCCGCTGGGGGCGCCAATTCATTGGCTGGCCGCGCCGCATCATGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGGCGCGTCTCAAGCCGCATTCGGTATTGATTTCCCGAGGGCGAAACAACGCATTCGGCCACCCGCATC
CCTGGGTCATGCAACGCTATAGGAAATTCGGCATGGCAATCCACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGTGCATTCGAACCCGCGCACACCGAGGCTGGGAATCGCCGCTACTGGCGCGAGCCGCCGTCCGCTGGGCCGTCGCCCCG
GCATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-675)

Domain of unknown function (DUF4131) (DUF4131)

(21-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.504

95.455

0.578