Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KSS91_RS21825 Genome accession   NZ_CP077078
Coordinates   4894370..4895005 (-) Length   211 a.a.
NCBI ID   WP_033047600.1    Uniprot ID   -
Organism   Pseudomonas azerbaijanorientalis strain SWRI123     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4889370..4900005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS91_RS21790 (KSS91_21790) - 4889772..4890242 (-) 471 WP_015096391.1 (2Fe-2S)-binding protein -
  KSS91_RS21795 (KSS91_21795) murB 4890484..4891503 (-) 1020 WP_217836084.1 UDP-N-acetylmuramate dehydrogenase -
  KSS91_RS21800 (KSS91_21800) - 4891500..4891964 (-) 465 WP_217836085.1 low molecular weight protein-tyrosine-phosphatase -
  KSS91_RS21805 (KSS91_21805) kdsB 4891964..4892728 (-) 765 WP_217836086.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KSS91_RS21810 (KSS91_21810) - 4892725..4892910 (-) 186 WP_003179363.1 Trm112 family protein -
  KSS91_RS21815 (KSS91_21815) lpxK 4892935..4893945 (-) 1011 WP_217836087.1 tetraacyldisaccharide 4'-kinase -
  KSS91_RS21820 (KSS91_21820) - 4893945..4894373 (-) 429 WP_007972252.1 biopolymer transporter ExbD -
  KSS91_RS21825 (KSS91_21825) exbB 4894370..4895005 (-) 636 WP_033047600.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KSS91_RS21830 (KSS91_21830) comA 4895104..4897338 (-) 2235 WP_217836088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KSS91_RS21835 (KSS91_21835) - 4897474..4897989 (+) 516 WP_015096398.1 DUF2062 domain-containing protein -
  KSS91_RS21840 (KSS91_21840) - 4898136..4898915 (-) 780 WP_217836089.1 ABC transporter permease -
  KSS91_RS21845 (KSS91_21845) - 4898912..4899844 (-) 933 WP_217836090.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.10 Da        Isoelectric Point: 7.3615

>NTDB_id=578759 KSS91_RS21825 WP_033047600.1 4894370..4895005(-) (exbB) [Pseudomonas azerbaijanorientalis strain SWRI123]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAQRVIHELERYVAALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578759 KSS91_RS21825 WP_033047600.1 4894370..4895005(-) (exbB) [Pseudomonas azerbaijanorientalis strain SWRI123]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGTGGCCATGGCCATCGTCGC
CGAACGTCTCTGGACTCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCAAAACATGGTCGCGAGATCATGAAGGAGTGTATCGAAGAGGCCGCACAACGGGTCATCCATGAGCTCGAGCGCTACGT
CGCCGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCACAGGCTCAGGCATGACAACCAACGCTTCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCC
GCGGGCCTGATGGTGGGTATCCCCGCAGTGTTTTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGCGACGTGGACCTGACCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834