Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KSS91_RS02535 Genome accession   NZ_CP077078
Coordinates   570260..572323 (+) Length   687 a.a.
NCBI ID   WP_217836958.1    Uniprot ID   -
Organism   Pseudomonas azerbaijanorientalis strain SWRI123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565260..577323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS91_RS02515 (KSS91_02515) comM 567472..568536 (+) 1065 WP_217836956.1 pilus assembly protein PilM Machinery gene
  KSS91_RS02520 (KSS91_02520) - 568536..569102 (+) 567 WP_126048784.1 PilN domain-containing protein -
  KSS91_RS02525 (KSS91_02525) - 569099..569722 (+) 624 WP_217836957.1 type 4a pilus biogenesis protein PilO -
  KSS91_RS02530 (KSS91_02530) - 569719..570246 (+) 528 WP_015093139.1 pilus assembly protein PilP -
  KSS91_RS02535 (KSS91_02535) pilQ 570260..572323 (+) 2064 WP_217836958.1 type IV pilus secretin PilQ Machinery gene
  KSS91_RS02540 (KSS91_02540) aroK 572328..572846 (+) 519 WP_015093141.1 shikimate kinase AroK -
  KSS91_RS02545 (KSS91_02545) aroB 572997..574097 (+) 1101 WP_095964619.1 3-dehydroquinate synthase -
  KSS91_RS02550 (KSS91_02550) - 574108..575709 (+) 1602 WP_217836959.1 AAA family ATPase -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74058.23 Da        Isoelectric Point: 5.3952

>NTDB_id=578750 KSS91_RS02535 WP_217836958.1 570260..572323(+) (pilQ) [Pseudomonas azerbaijanorientalis strain SWRI123]
MNRIFSTFGLSLWIAMLSPMVQAANLKALDVAALPGDRVELKLSFDAPPPLPQGYMTESPARIALDLPGVVSQLASKTRD
LGSGNARSATVVEAGGRTRLIINLAQSAPYDSRIEGNNLLVVVGQGVKPSAPGPTAPAMPARAAATPGKAIRGVDFQRGT
QGEGNVVIDLSDPSIAPDIQQREGKIIVGFAKTRLPEPLRVRLDVKDFATPVQYVKASASGDRAIISIEPGGTFDYSTYQ
TDSKLTVSVRPATVDDLQKRNAGSQAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPWDQALD
LVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEAKPDERGSI
TVDERTNNIIAYQTQDRLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNRGNWNTSGVSNGLNGSST
IGTPGSTSTNSPFVDMGVANNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEASS
SGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKV
VDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=578750 KSS91_RS02535 WP_217836958.1 570260..572323(+) (pilQ) [Pseudomonas azerbaijanorientalis strain SWRI123]
ATGAACAGGATTTTCTCCACCTTCGGCCTTTCGCTATGGATAGCGATGTTGTCGCCGATGGTACAAGCGGCCAATCTCAA
GGCGCTGGATGTCGCCGCACTGCCGGGAGACCGGGTCGAGTTGAAGTTGTCGTTCGATGCACCGCCCCCGTTGCCTCAGG
GTTACATGACGGAGTCGCCGGCCCGGATTGCGCTGGATTTGCCGGGTGTCGTCAGTCAGTTGGCCAGCAAGACTCGCGAT
CTCGGTAGTGGAAATGCCCGTAGTGCAACGGTGGTGGAGGCCGGGGGACGTACGCGATTGATCATCAACCTGGCTCAGTC
GGCCCCGTACGACTCGCGAATTGAAGGCAACAATTTGTTGGTGGTTGTCGGGCAGGGTGTCAAACCCTCTGCACCCGGGC
CGACGGCCCCGGCAATGCCGGCACGCGCCGCTGCGACGCCAGGCAAGGCCATTCGGGGTGTGGATTTTCAGCGAGGGACG
CAGGGCGAGGGCAACGTGGTGATCGACTTGTCGGACCCATCGATTGCGCCCGACATACAACAGCGCGAGGGCAAGATTAT
TGTCGGGTTCGCCAAAACCCGATTGCCCGAGCCGTTGCGCGTGCGTCTGGATGTGAAGGATTTCGCCACGCCCGTGCAGT
ACGTCAAGGCCAGCGCGAGCGGCGATCGAGCCATCATCAGCATCGAGCCCGGTGGTACGTTCGATTACTCGACCTATCAG
ACCGACAGCAAGCTCACGGTCAGCGTTCGCCCGGCGACGGTCGACGACCTGCAAAAGCGCAATGCCGGGTCACAGGCTTA
CAGCGGCGAGAAGCTTTCGCTGAACTTCCAGGACATCGATGTGCGGTCGGTGCTGCAATTGATCGCCGATTTCACCAACC
TCAATCTGGTGGCCAGCGACACGGTGCAGGGGGGCATCACGTTGCGCCTGCAGAACGTGCCGTGGGATCAGGCGCTGGAT
CTGGTTCTGAAAACCAAGGGGCTGGACAAGCGCAAGGTCGGTAATGTCCTGCTTGTTGCGCCGGCCGATGAAATTGCTGC
CCGTGAGCGACAGGAACTGGAATCACAAAAGCAGATTGCCGATCTGGCGCCGTTGCGTCGGGAACTGTTGCAGGTGAATT
ACGCCAAGGCGGCGGACATCGCCAAACTCTTCCAGTCGGTGACCAGTGCCGAAGCGAAACCCGATGAGCGGGGGTCGATC
ACCGTCGACGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGACCGGCTAGATGAGCTGCGCAGGATCGTCACGCA
GCTGGATATCCCTGTGCGTCAGGTCATGATCGAGGCGCGCATTGTCGAAGCCAACGTCGACTATGACAAAAGCCTCGGGG
TGCGCTGGGGCGGATCGATACAGAACCGGGGCAACTGGAACACCTCCGGTGTCAGCAATGGACTCAACGGGTCATCGACC
ATCGGCACGCCCGGCAGTACCAGCACCAACTCACCGTTCGTCGACATGGGCGTAGCCAACAACACCTCGGGAATCGGCAT
CGCGTTCATCACCGATAACGTCTTGCTGGACCTGGAACTGACGGCCATGGAGAAAACCGGCAACGGGGAAATCGTCTCGC
AACCCAAGGTGGTCACGTCCGACAAGGAAACCGCCAAGATCCTCAAGGGCACCGAGATTCCCTATCAGGAGGCCAGTTCC
AGTGGCGCGACTTCGGTGTCGTTCAAGGAGGCCTCGCTGTCCTTGGAGGTGACGCCGCAGATCACGCCCGACAACCGGAT
CATCATGGAGGTCAAGGTGACCAAGGACGAGCCGGACTACCTGAACAAGGTCCAGGATGTACCGCCGATCAAGAAAAACG
AGGTCAACGCCAAGGTCCTGGTCAACGATGGCGAGACCATCGTCATTGGCGGCGTTTTCTCAAATACTCAGAGCAAGGTC
GTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGAGAAAAAATC
CGAGCTGTTGGTATTCCTCACTCCGCGTATCATGAATAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(295-341)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-434)

Bacterial type II and III secretion system protein (Secretin)

(522-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.769

100

0.737
  pilQ Acinetobacter baumannii strain A118

38.451

100

0.419
  pilQ Acinetobacter baumannii D1279779

38.451

100

0.419
  comQ Acinetobacter baylyi ADP1

41.655

100

0.418
  pilQ Legionella pneumophila strain Lp02

38.633

97.962

0.378
  pilQ Legionella pneumophila strain ERS1305867

38.484

97.962

0.377