Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSS91_RS02515 Genome accession   NZ_CP077078
Coordinates   567472..568536 (+) Length   354 a.a.
NCBI ID   WP_217836956.1    Uniprot ID   -
Organism   Pseudomonas azerbaijanorientalis strain SWRI123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 562472..573536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS91_RS02505 (KSS91_02505) - 563282..564550 (+) 1269 WP_008047852.1 malic enzyme-like NAD(P)-binding protein -
  KSS91_RS02510 (KSS91_02510) - 564816..567257 (-) 2442 WP_217836955.1 penicillin-binding protein 1A -
  KSS91_RS02515 (KSS91_02515) comM 567472..568536 (+) 1065 WP_217836956.1 pilus assembly protein PilM Machinery gene
  KSS91_RS02520 (KSS91_02520) - 568536..569102 (+) 567 WP_126048784.1 PilN domain-containing protein -
  KSS91_RS02525 (KSS91_02525) - 569099..569722 (+) 624 WP_217836957.1 type 4a pilus biogenesis protein PilO -
  KSS91_RS02530 (KSS91_02530) - 569719..570246 (+) 528 WP_015093139.1 pilus assembly protein PilP -
  KSS91_RS02535 (KSS91_02535) pilQ 570260..572323 (+) 2064 WP_217836958.1 type IV pilus secretin PilQ Machinery gene
  KSS91_RS02540 (KSS91_02540) aroK 572328..572846 (+) 519 WP_015093141.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37767.57 Da        Isoelectric Point: 4.7968

>NTDB_id=578749 KSS91_RS02515 WP_217836956.1 567472..568536(+) (comM) [Pseudomonas azerbaijanorientalis strain SWRI123]
MPGLFNKKSSTLLGIDISSTSVKLLELSRQGERFRVEAYAVEPLPVGAVIEKNIADLEGVGLALARALTRARTGLKGVAV
AVAGSAVITKIIEMDAALSEDEMESQLKIEADQYIPYPLDEVAIDFEVQGTCARNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLASRLAVSKEPLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTGEIQRRYGLTL
EQASLAQRKGGLPEDYAGEVLQPFQQALVQQVSRSLQFFFAAGQYSAVDHILLAGGTASVPGLPLLIEQQLGTPTLIANP
FSEMMLGSKVNGAALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=578749 KSS91_RS02515 WP_217836956.1 567472..568536(+) (comM) [Pseudomonas azerbaijanorientalis strain SWRI123]
GTGCCAGGACTCTTCAACAAAAAATCCAGTACGCTCCTCGGAATCGATATCAGCTCTACCTCGGTAAAGCTTCTGGAATT
GAGCCGTCAGGGCGAACGCTTCCGGGTCGAGGCTTATGCGGTCGAGCCTTTGCCCGTCGGCGCGGTGATCGAAAAGAACA
TCGCTGACCTCGAGGGCGTGGGGCTGGCCCTCGCGCGCGCGCTGACCAGGGCCAGAACCGGCCTCAAGGGTGTGGCCGTG
GCTGTGGCAGGCTCGGCGGTGATCACCAAGATCATCGAGATGGACGCCGCTCTTTCCGAAGACGAAATGGAAAGTCAGCT
GAAGATCGAGGCGGATCAATATATTCCCTATCCCCTGGATGAAGTCGCGATCGACTTTGAAGTCCAGGGCACCTGCGCGC
GCAACCCAGAGCGGGTCAACGTGCTGCTCGCGGCTTGCCGCAAGGAAAACGTCGAGGTCCGCGAGGCCGCCCTGGCTCTG
GCTGGGCTGACCGCCCGCGTAGTCGATGTCGAGGCCTATGCACTGGAGCGTTCATTCGGGTTGCTGGCCAGTCGGCTTGC
GGTTTCCAAGGAGCCTTTGACGGTCGCAGTGGTGGATATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACAACGGGC
GGATTATCTACACCCGTGAACAACTGTTCGGCGGTCGGCAGTTGACCGGGGAAATCCAGCGTCGCTATGGCCTGACGCTG
GAGCAGGCGAGTCTGGCGCAAAGGAAGGGCGGCCTGCCGGAAGACTATGCCGGTGAGGTCTTGCAGCCATTTCAACAGGC
ACTGGTGCAGCAGGTGTCGCGCTCGTTGCAGTTCTTCTTTGCTGCCGGCCAGTACAGCGCCGTCGACCATATCCTGCTGG
CCGGCGGTACCGCGTCGGTCCCGGGGCTGCCCCTTTTGATCGAGCAGCAATTGGGCACGCCGACCCTGATCGCGAACCCT
TTTTCCGAAATGATGCTGGGCAGCAAGGTCAATGGTGCCGCCCTGGCGAGTGATGCCCCGGCGTTGATGATTGCCTGTGG
TCTTGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

54.701

99.153

0.542
  pilM Acinetobacter baumannii D1279779

54.701

99.153

0.542
  comM Acinetobacter baylyi ADP1

51.977

100

0.52
  pilM Legionella pneumophila strain ERS1305867

47.458

100

0.475