Detailed information NTG0578686

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KSS93_RS07340
• Genome accession: NZ_CP077075
• Coordinates: 1653653..1654519 (-)
• Length: 288 a.a.
• NCBI ID: WP_217887728.1
• Uniprot ID: -
• Organism: Pseudomonas xanthosomatis strain COR54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1648653..1659519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS93_RS07310 (KSS93_07310)	-	1649461..1650756 (-)	1296	WP_217887725.1	NAD(P)/FAD-dependent oxidoreductase	-
KSS93_RS07315 (KSS93_07315)	-	1650841..1651014 (-)	174	WP_217841777.1	DUF3094 family protein	-
KSS93_RS07320 (KSS93_07320)	-	1651147..1651776 (-)	630	WP_217841778.1	DUF1780 domain-containing protein	-
KSS93_RS07325 (KSS93_07325)	-	1651895..1652578 (+)	684	WP_217887726.1	energy-coupling factor ABC transporter permease	-
KSS93_RS07330 (KSS93_07330)	yacG	1652833..1653033 (-)	201	WP_217841780.1	DNA gyrase inhibitor YacG	-
KSS93_RS07335 (KSS93_07335)	coaE	1653030..1653653 (-)	624	WP_217887727.1	dephospho-CoA kinase	-
KSS93_RS07340 (KSS93_07340)	pilD	1653653..1654519 (-)	867	WP_217887728.1	A24 family peptidase	Machinery gene
KSS93_RS07345 (KSS93_07345)	-	1654522..1655730 (-)	1209	WP_217887729.1	type II secretion system F family protein	-
KSS93_RS07350 (KSS93_07350)	-	1655948..1656358 (+)	411	WP_217887730.1	pilin	-
KSS93_RS07360 (KSS93_07360)	-	1656621..1656785 (+)	165	WP_217887731.1	hypothetical protein	-
KSS93_RS07365 (KSS93_07365)	-	1656849..1657109 (-)	261	WP_217887732.1	DUF6429 family protein	-
KSS93_RS07370 (KSS93_07370)	-	1657177..1658709 (-)	1533	WP_217887733.1	IS66 family transposase	-
KSS93_RS07375 (KSS93_07375)	tnpB	1658884..1659087 (-)	204	WP_015372023.1	IS66 family insertion sequence element accessory protein TnpB	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31606.71 Da
• Isoelectric Point: 7.0088

>NTDB_id=578686 KSS93_RS07340 WP_217887728.1 1653653..1654519(-) (pilD) [Pseudomonas xanthosomatis strain COR54]
MNAWTVIVDHPPFFYCLAALLGLLVGSFINVLAYRLPVMLERQWQREAQEVLGLPETVHERFDLCLPASRCPHCQHRIRA
WENIPVVSYLALRGRCSACEGRIGVRYPLVELGSALLSLLVAWHFGPGLAALLVMLLTWGLLALSLIDADHQLLPDVLVL
PLLWLGLVVNAFGLLVPLGDALWGAVAGYLSLWSVYWVFRLLTGKEGMGFGDFKLLAMLGAWGGWQILPVTLMGASIAGA
LIGLVLLRLQRAQRGTPLPFGPYLAIAGWIALLWGDEIVASYLQLLGP

Nucleotide

• Length: 867 bp

>NTDB_id=578686 KSS93_RS07340 WP_217887728.1 1653653..1654519(-) (pilD) [Pseudomonas xanthosomatis strain COR54]
ATGAATGCCTGGACCGTTATCGTCGACCATCCGCCCTTCTTCTATTGCCTGGCTGCGCTGCTGGGGTTGCTGGTGGGCAG
CTTCATCAATGTGCTGGCGTACCGCTTGCCGGTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAAGAGGTGCTGGGGC
TGCCGGAAACCGTGCACGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCGCTGCCCGCACTGTCAGCACCGTATTCGGGCG
TGGGAGAACATTCCGGTAGTGAGCTACCTGGCGCTGCGCGGGCGTTGCTCGGCGTGCGAGGGGCGCATTGGCGTGCGCTA
CCCGCTGGTGGAGCTGGGCAGCGCGTTGCTGTCGTTGCTGGTGGCTTGGCACTTTGGGCCGGGGCTGGCGGCGTTGCTGG
TGATGCTGCTGACCTGGGGGTTGCTGGCGCTTAGCCTGATCGATGCCGACCACCAACTGCTGCCGGATGTGCTGGTGCTG
CCGTTGCTGTGGCTGGGGCTGGTGGTGAATGCCTTCGGGCTGCTGGTGCCGCTTGGCGATGCGCTGTGGGGCGCGGTGGC
GGGCTACCTGAGCCTGTGGTCGGTGTACTGGGTGTTCCGCCTGCTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGTTGCTGGCGATGCTCGGGGCCTGGGGTGGTTGGCAGATTCTGCCGGTAACGCTGATGGGCGCGTCGATTGCCGGGGCG
CTGATCGGGCTGGTGTTGCTGCGCCTGCAACGCGCGCAGCGGGGTACGCCACTGCCTTTTGGGCCTTACCTGGCAATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCTTACCTGCAACTACTTGGCCCCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.214	97.222	0.517
pilD	Neisseria gonorrhoeae MS11	52.045	93.403	0.486
pilD	Acinetobacter baumannii D1279779	50.185	94.097	0.472
pilD	Vibrio campbellii strain DS40M4	48.746	96.875	0.472
pilD	Acinetobacter nosocomialis M2	49.077	94.097	0.462