Detailed information NTG0578659

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KSS89_RS10010
• Genome accession: NZ_CP077074
• Coordinates: 2126072..2128303 (+)
• Length: 743 a.a.
• NCBI ID: WP_124346167.1
• Uniprot ID: -
• Organism: Pseudomonas sessilinigenes strain CMR12a
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2121072..2133303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS89_RS09985 (KSS89_09985)	-	2122198..2122857 (+)	660	WP_124346164.1	transglutaminase family protein	-
KSS89_RS09990 (KSS89_09990)	-	2122900..2123523 (+)	624	WP_068578027.1	glutathione S-transferase family protein	-
KSS89_RS09995 (KSS89_09995)	-	2123656..2124588 (+)	933	WP_124346165.1	ABC transporter ATP-binding protein	-
KSS89_RS10000 (KSS89_10000)	-	2124585..2125364 (+)	780	WP_068578002.1	ABC transporter permease	-
KSS89_RS10005 (KSS89_10005)	-	2125416..2125931 (-)	516	WP_124346166.1	DUF2062 domain-containing protein	-
KSS89_RS10010 (KSS89_10010)	comA	2126072..2128303 (+)	2232	WP_124346167.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KSS89_RS10015 (KSS89_10015)	exbB	2128406..2129041 (+)	636	WP_068577997.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
KSS89_RS10020 (KSS89_10020)	-	2129038..2129466 (+)	429	WP_068577995.1	biopolymer transporter ExbD	-
KSS89_RS10025 (KSS89_10025)	lpxK	2129466..2130476 (+)	1011	WP_124346168.1	tetraacyldisaccharide 4'-kinase	-
KSS89_RS10030 (KSS89_10030)	-	2130501..2130686 (+)	186	WP_056836870.1	Trm112 family protein	-
KSS89_RS10035 (KSS89_10035)	kdsB	2130683..2131447 (+)	765	WP_124346169.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KSS89_RS10040 (KSS89_10040)	-	2131447..2131911 (+)	465	WP_068577989.1	low molecular weight protein-tyrosine-phosphatase	-
KSS89_RS10045 (KSS89_10045)	murB	2131908..2132927 (+)	1020	WP_068577987.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 82090.15 Da
• Isoelectric Point: 10.6619

>NTDB_id=578659 KSS89_RS10010 WP_124346167.1 2126072..2128303(+) (comA) [Pseudomonas sessilinigenes strain CMR12a]
MRTGMLGLAAGLLALGFLPALPPAWWLWPMGILALMMLPFRTHPVAFFLFGLAWACTCAQWALDDRLASRLDGQTRWLEG
RVVGLPESGTGVVRFEVQDAQARRDRLPRRMRLSWRDGPQVRSGERWRLAVTLRRPAGLLNLQGFDYEAWLLARRIGATG
TIKDGQLLAAARGAWRDGLRQRLLAVEAHGRAGGLAALVMGDGSGLAREDWQLLQDTGTVHLMVISGQHISLLAGVVYLA
VAGLARHGAWPERWPWLPWACALAFLAALGYGLLAGFDVPVQRSCVMVALVLLWRLRFRHLGTWWPLLLALDAVLLFEPL
ASLQPGFWLSFAAVAILVFTFAGRLGTWRWWQSWSRAQWLVAIGLLPSLLALGLPISLSGPVANLLAVPWISFLVLPPAL
LGCLLLPVPYLGEGMLWLAGGLLDGLFRWLEVVARWSPAWMAPLLPWWLWVLSCLGAGLLLLPAGTPLRIFGWPLLLLVA
WPPPQRVPYGQAEVWQLDVGQGLSFILRTRERAMLYDAGARSGDFDLGERVVVPTLHRLAIRQLDLMLLSHADNDHAGGA
LAVQRALPVHLVRSGEPRELPAALQATPCESGVSWQWDGVRFSQWQWAQARDGNQASCVLLVEANGERLLLTGDIDVQAE
RAFLDSPLGVPVHWLQAPHHGSRTSSSRALLQRLAPGAVLISRGRGNAYGHPHPQVVARYRRQGVIIYDSAEQGALKLQL
GAFSKPYSVREQRRFWRAPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=578659 KSS89_RS10010 WP_124346167.1 2126072..2128303(+) (comA) [Pseudomonas sessilinigenes strain CMR12a]
ATGCGCACAGGGATGCTGGGGTTGGCCGCGGGGCTTCTGGCACTGGGTTTCCTGCCAGCCTTGCCGCCCGCCTGGTGGTT
GTGGCCGATGGGGATACTGGCATTGATGATGCTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGCCTGGCTT
GGGCGTGCACGTGCGCGCAATGGGCGCTTGATGACCGCCTGGCCTCGCGACTGGATGGGCAGACCCGTTGGCTGGAGGGG
AGGGTCGTCGGTTTGCCGGAGAGCGGAACAGGGGTAGTACGTTTCGAGGTGCAGGATGCCCAGGCCCGGCGTGATCGGTT
GCCAAGGCGAATGCGCCTGAGCTGGCGTGATGGGCCGCAGGTCAGAAGTGGCGAGCGCTGGCGCCTGGCGGTGACCTTGC
GGCGCCCGGCGGGCCTGCTCAATCTGCAGGGTTTCGACTACGAAGCCTGGTTGCTGGCCAGGCGGATTGGCGCCACCGGT
ACGATCAAGGACGGCCAGCTACTGGCTGCGGCCCGTGGTGCCTGGCGTGATGGCTTGCGCCAGCGGTTATTGGCCGTCGA
GGCCCATGGGCGTGCCGGAGGGCTGGCTGCTCTGGTGATGGGGGACGGTTCCGGGTTGGCGCGTGAGGATTGGCAGCTGC
TGCAGGACACTGGCACCGTGCACTTGATGGTGATCTCCGGGCAGCACATCAGCCTGTTGGCCGGGGTGGTTTACCTGGCC
GTGGCGGGATTGGCACGTCATGGCGCGTGGCCCGAGCGTTGGCCCTGGCTGCCCTGGGCTTGTGCCCTGGCATTCCTCGC
GGCCCTGGGTTATGGGCTGCTGGCCGGGTTCGACGTGCCCGTCCAGCGCTCTTGTGTGATGGTGGCGCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGGACCTGGTGGCCGTTGTTGCTGGCGCTTGATGCGGTCTTGCTGTTCGAACCCCTG
GCCAGCCTGCAACCGGGGTTCTGGTTGTCGTTCGCCGCGGTGGCGATCCTGGTCTTCACCTTCGCTGGGCGCCTGGGGAC
ATGGCGCTGGTGGCAAAGCTGGAGCCGCGCCCAGTGGTTGGTGGCCATCGGCCTCTTGCCATCGCTACTGGCCCTGGGCC
TGCCCATCAGCCTCAGTGGTCCAGTGGCCAATCTGCTGGCCGTTCCCTGGATCAGTTTTCTAGTACTGCCGCCAGCCTTG
TTGGGGTGCCTGCTGTTGCCCGTGCCCTATCTGGGAGAGGGAATGCTGTGGCTGGCCGGTGGGTTGCTCGACGGGTTGTT
TCGTTGGCTGGAGGTGGTGGCCCGATGGTCCCCGGCTTGGATGGCACCCCTGCTTCCCTGGTGGCTCTGGGTCTTGTCCT
GCCTGGGTGCTGGCTTGTTGCTGTTGCCTGCTGGTACACCGTTGCGGATTTTCGGCTGGCCCTTGTTGTTGCTGGTGGCC
TGGCCACCGCCGCAGCGGGTGCCCTATGGCCAGGCCGAGGTCTGGCAGCTGGATGTGGGGCAGGGATTGTCATTCATCCT
GCGTACCAGGGAGCGCGCGATGCTGTATGACGCCGGCGCCCGCAGCGGTGATTTCGACCTGGGGGAGCGAGTGGTGGTGC
CGACCTTGCATCGGCTGGCCATCCGGCAACTGGACCTGATGCTGCTCAGCCATGCCGATAACGATCACGCCGGAGGTGCC
CTGGCGGTGCAGCGGGCGTTGCCGGTGCACCTGGTACGCAGTGGCGAGCCCCGGGAGTTGCCGGCGGCCCTGCAAGCCAC
ACCTTGTGAGTCCGGAGTGAGCTGGCAATGGGATGGCGTGCGTTTCAGCCAATGGCAATGGGCCCAAGCCCGTGATGGCA
ACCAGGCATCCTGCGTGCTGTTGGTCGAGGCGAATGGAGAGCGCCTGCTGCTCACCGGCGATATCGACGTCCAGGCCGAA
AGAGCCTTTCTAGACAGTCCGCTGGGGGTGCCTGTGCATTGGCTGCAAGCGCCTCACCACGGTAGCCGGACCTCGTCGTC
CAGGGCCTTGTTGCAGCGCCTGGCCCCTGGCGCGGTGCTGATCTCCCGGGGGCGTGGCAATGCCTATGGCCATCCCCACC
CGCAAGTGGTGGCGCGTTATCGACGCCAGGGCGTGATCATCTACGACAGCGCCGAGCAGGGGGCACTGAAGCTGCAACTG
GGGGCCTTCAGCAAGCCATACAGCGTGCGGGAGCAGCGGCGTTTCTGGCGTGCTCCACCGGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.953	96.635	0.608
comA	Ralstonia pseudosolanacearum GMI1000	32.847	100	0.363