Detailed information NTG0578639

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KSS95_RS06930
• Genome accession: NZ_CP077073
• Coordinates: 1531807..1532673 (-)
• Length: 288 a.a.
• NCBI ID: WP_217852765.1
• Uniprot ID: -
• Organism: Pseudomonas muyukensis strain COW39
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1526807..1537673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSS95_RS06890 (KSS95_06890)	-	1526990..1527169 (+)	180	WP_263974810.1	dihydrofolate reductase family protein	-
KSS95_RS06895 (KSS95_06895)	-	1527294..1528589 (-)	1296	WP_217852756.1	NAD(P)/FAD-dependent oxidoreductase	-
KSS95_RS06900 (KSS95_06900)	-	1528674..1528847 (-)	174	WP_023631877.1	DUF3094 family protein	-
KSS95_RS06905 (KSS95_06905)	-	1528980..1529609 (-)	630	WP_186662695.1	DUF1780 domain-containing protein	-
KSS95_RS06910 (KSS95_06910)	-	1529665..1530096 (-)	432	WP_217852758.1	hypothetical protein	-
KSS95_RS06915 (KSS95_06915)	-	1530183..1530890 (+)	708	WP_217852759.1	energy-coupling factor ABC transporter permease	-
KSS95_RS06920 (KSS95_06920)	yacG	1530987..1531187 (-)	201	WP_217852761.1	DNA gyrase inhibitor YacG	-
KSS95_RS06925 (KSS95_06925)	coaE	1531184..1531807 (-)	624	WP_217852763.1	dephospho-CoA kinase	-
KSS95_RS06930 (KSS95_06930)	pilD	1531807..1532673 (-)	867	WP_217852765.1	A24 family peptidase	Machinery gene
KSS95_RS06935 (KSS95_06935)	-	1532676..1533884 (-)	1209	WP_217852767.1	type II secretion system F family protein	-
KSS95_RS06940 (KSS95_06940)	-	1534112..1534522 (+)	411	WP_217852769.1	pilin	-
KSS95_RS06950 (KSS95_06950)	-	1534818..1536140 (+)	1323	WP_217852771.1	integrase arm-type DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31429.59 Da
• Isoelectric Point: 7.6876

>NTDB_id=578639 KSS95_RS06930 WP_217852765.1 1531807..1532673(-) (pilD) [Pseudomonas muyukensis strain COW39]
MNAWAVIVDHPPFFYALAAVLGLLVGSFLNVLAYRLPVMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA
WENIPVLSYLALRGRCAGCKARISARYPLVELASALLSLLVAWHFGPGVAALAVMLLTWGLIGLSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLADAVWGAVAGYLSLWTVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQVLPLTLMLASLVGA
LVGLTLVRLKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide

• Length: 867 bp

>NTDB_id=578639 KSS95_RS06930 WP_217852765.1 1531807..1532673(-) (pilD) [Pseudomonas muyukensis strain COW39]
ATGAATGCCTGGGCCGTAATCGTCGATCATCCGCCGTTCTTTTATGCCCTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTACCGACTGCCGGTGATGCTCGAACGCCAGTGGCAGCGGGAGGCGCAGGAGGTGCTGGGGC
TGCCCCAGGCCGAGCACGAGCGTTTCGACCTGTGTTTGCCGGCGTCGCGCTGCCCCCACTGCCAGCGCCCGATCCGGGCG
TGGGAAAACATACCGGTGTTGAGTTACCTGGCCTTACGCGGGCGTTGCGCGGGGTGCAAGGCGCGGATCAGTGCGCGTTA
TCCACTGGTGGAGCTGGCCAGCGCCTTGCTGTCGCTGCTGGTGGCCTGGCATTTCGGGCCGGGCGTGGCGGCGCTGGCGG
TGATGCTGCTGACCTGGGGGCTGATCGGCTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGCTGGTGGTCAACGCCTTCGGGTTGCTGGTGCCGCTGGCCGATGCGGTATGGGGCGCGGTGGC
GGGCTACCTGAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGCTGCTGGCCATGCTGGGTGCCTGGGGTGGTTGGCAGGTTTTGCCGCTGACCTTGATGCTGGCCTCCTTGGTGGGGGCG
CTGGTTGGGCTGACGCTGGTGCGGCTTAAGCGCACGCAAATGGGCGCTGCATTGCCTTTCGGGCCTTATCTGGCCATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCCTCATACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.839	96.875	0.531
pilD	Acinetobacter baumannii D1279779	51.661	94.097	0.486
pilD	Neisseria gonorrhoeae MS11	52.045	93.403	0.486
pilD	Vibrio campbellii strain DS40M4	49.819	96.181	0.479
pilD	Acinetobacter nosocomialis M2	50.554	94.097	0.476