Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MUA07_RS00020 Genome accession   NZ_CP094750
Coordinates   3398..4510 (+) Length   370 a.a.
NCBI ID   WP_234746491.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS00005 (MUA07_00005) dnaA 1..1362 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  MUA07_RS00010 (MUA07_00010) dnaN 1642..2775 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  MUA07_RS00015 (MUA07_00015) yaaA 3156..3401 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  MUA07_RS00020 (MUA07_00020) recF 3398..4510 (+) 1113 WP_234746491.1 DNA replication/repair protein RecF Machinery gene
  MUA07_RS00025 (MUA07_00025) gyrB 4520..6454 (+) 1935 WP_208689412.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MUA07_RS00030 (MUA07_00030) gyrA 6491..9151 (+) 2661 WP_262542010.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42425.45 Da        Isoelectric Point: 6.4362

>NTDB_id=578488 MUA07_RS00020 WP_234746491.1 3398..4510(+) (recF) [Staphylococcus aureus strain IVB6248]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYALKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=578488 MUA07_RS00020 WP_234746491.1 3398..4510(+) (recF) [Staphylococcus aureus strain IVB6248]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCATTGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCGAAACCCATTCATGCTGGTA
TTACAAATGACAAAGAAGTGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGACTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497