Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   KRH48_RS04640 Genome accession   NZ_CP076839
Coordinates   988812..989381 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-100-016     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 983812..994381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRH48_RS04600 (KRH48_04600) - 984286..984894 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  KRH48_RS04605 (KRH48_04605) rplL 985069..985437 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  KRH48_RS04610 (KRH48_04610) rplJ 985480..985980 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  KRH48_RS04615 (KRH48_04615) rplA 986252..986944 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  KRH48_RS04620 (KRH48_04620) rplK 987152..987574 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  KRH48_RS04625 (KRH48_04625) nusG 987755..988303 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  KRH48_RS04630 (KRH48_04630) secE 988316..988498 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  KRH48_RS04635 (KRH48_04635) rpmG 988554..988697 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  KRH48_RS04640 (KRH48_04640) sigH 988812..989381 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  KRH48_RS04645 (KRH48_04645) - 989463..989987 (-) 525 WP_000664738.1 NYN domain-containing protein -
  KRH48_RS04650 (KRH48_04650) rlmB 989987..990733 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KRH48_RS04655 (KRH48_04655) - 990741..991145 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  KRH48_RS04660 (KRH48_04660) cysS 991138..992538 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  KRH48_RS04665 (KRH48_04665) cysE 992522..993169 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=578443 KRH48_RS04640 WP_000872866.1 988812..989381(-) (sigH) [Staphylococcus aureus strain 55-100-016]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=578443 KRH48_RS04640 WP_000872866.1 988812..989381(-) (sigH) [Staphylococcus aureus strain 55-100-016]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974