NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KQ255_RS20440	Genome accession	NZ_CP076821
Coordinates	756505..757365 (-)	Length	286 a.a.
NCBI ID	WP_001152277.1	Uniprot ID	A0A009HWK1
Organism	Acinetobacter baumannii strain UC22850
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 751505..762365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ255_RS03630 (KQ255_03615)	-	752396..753706 (+)	1311	WP_000753277.1	tetratricopeptide repeat protein	-
KQ255_RS03635 (KQ255_03620)	-	753783..754109 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KQ255_RS03640 (KQ255_03625)	rlmB	754211..754960 (+)	750	WP_001118150.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KQ255_RS03645 (KQ255_03630)	-	754996..755910 (+)	915	WP_000075011.1	DMT family transporter	-
KQ255_RS03650 (KQ255_03635)	coaE	755907..756503 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
KQ255_RS20440 (KQ255_03640)	pilD	756505..757365 (-)	861	WP_001152277.1	A24 family peptidase	Machinery gene
KQ255_RS03665 (KQ255_03645)	pilC	757365..758591 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
KQ255_RS03670 (KQ255_03650)	pilB	758621..760333 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KQ255_RS03675 (KQ255_03655)	tpiA	760624..761418 (+)	795	WP_000016931.1	triose-phosphate isomerase	-
KQ255_RS03680 (KQ255_03660)	secG	761431..761760 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32038.43 Da Isoelectric Point: 7.1041

                                >NTDB_id=578304 KQ255_RS20440 WP_001152277.1 756505..757365(-) (pilD) [Acinetobacter baumannii strain UC22850]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=578304 KQ255_RS20440 WP_001152277.1 756505..757365(-) (pilD) [Acinetobacter baumannii strain UC22850]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0578304