Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ257_RS08970 Genome accession   NZ_CP076817
Coordinates   1851852..1852379 (-) Length   175 a.a.
NCBI ID   WP_109433605.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846852..1857379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS08950 (KQ257_08915) - 1847041..1847916 (-) 876 WP_000218799.1 hypothetical protein -
  KQ257_RS08955 (KQ257_08920) aroB 1847932..1849014 (-) 1083 WP_001193999.1 3-dehydroquinate synthase -
  KQ257_RS08960 (KQ257_08925) aroK 1849043..1849612 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KQ257_RS08965 (KQ257_08930) pilQ 1849624..1851789 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ257_RS08970 (KQ257_08935) pilP 1851852..1852379 (-) 528 WP_109433605.1 pilus assembly protein PilP Machinery gene
  KQ257_RS08975 (KQ257_08940) pilO 1852390..1853130 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ257_RS08980 (KQ257_08945) pilN 1853127..1853768 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  KQ257_RS08985 (KQ257_08950) pilM 1853768..1854826 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19403.64 Da        Isoelectric Point: 8.9898

>NTDB_id=578227 KQ257_RS08970 WP_109433605.1 1851852..1852379(-) (pilP) [Acinetobacter baumannii strain UC24137]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIAHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578227 KQ257_RS08970 WP_109433605.1 1851852..1852379(-) (pilP) [Acinetobacter baumannii strain UC24137]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTGCCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709