Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KQ257_RS08980 Genome accession   NZ_CP076817
Coordinates   1853127..1853768 (-) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848127..1858768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS08960 (KQ257_08925) aroK 1849043..1849612 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KQ257_RS08965 (KQ257_08930) pilQ 1849624..1851789 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ257_RS08970 (KQ257_08935) pilP 1851852..1852379 (-) 528 WP_109433605.1 pilus assembly protein PilP Machinery gene
  KQ257_RS08975 (KQ257_08940) pilO 1852390..1853130 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ257_RS08980 (KQ257_08945) pilN 1853127..1853768 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  KQ257_RS08985 (KQ257_08950) pilM 1853768..1854826 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ257_RS08990 (KQ257_08955) ponA 1854987..1857542 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KQ257_RS08995 (KQ257_08960) - 1857560..1858384 (-) 825 WP_002027617.1 putative RNA methyltransferase -
  KQ257_RS09000 (KQ257_08965) - 1858387..1858719 (-) 333 WP_046693073.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=578229 KQ257_RS08980 WP_000201226.1 1853127..1853768(-) (pilN) [Acinetobacter baumannii strain UC24137]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578229 KQ257_RS08980 WP_000201226.1 1853127..1853768(-) (pilN) [Acinetobacter baumannii strain UC24137]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709