Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ257_RS08850 Genome accession   NZ_CP076817
Coordinates   1825431..1825904 (-) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain UC24137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820431..1830904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS08835 (KQ257_08805) pilX 1823060..1823878 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ257_RS08840 (KQ257_08810) pilW 1823875..1824876 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  KQ257_RS08845 (KQ257_08815) pilV 1824877..1825437 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ257_RS08850 (KQ257_08820) fimU 1825431..1825904 (-) 474 WP_001214067.1 GspH/FimT family pseudopilin Machinery gene
  KQ257_RS08855 (KQ257_08825) ispH 1826074..1827024 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ257_RS08860 (KQ257_08830) gmk 1827147..1827776 (+) 630 WP_000015937.1 guanylate kinase -
  KQ257_RS08865 (KQ257_08835) rpoZ 1827849..1828127 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ257_RS08870 (KQ257_08840) - 1828166..1828296 (+) 131 Protein_1736 hypothetical protein -
  KQ257_RS08875 (KQ257_08845) - 1828336..1830441 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=578224 KQ257_RS08850 WP_001214067.1 1825431..1825904(-) (fimU) [Acinetobacter baumannii strain UC24137]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=578224 KQ257_RS08850 WP_001214067.1 1825431..1825904(-) (fimU) [Acinetobacter baumannii strain UC24137]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994