Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KQ257_RS08835 Genome accession   NZ_CP076817
Coordinates   1823060..1823878 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain UC24137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1818060..1828878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ257_RS08820 (KQ257_08790) pilE 1818277..1818702 (-) 426 WP_005130737.1 type IV pilin protein Machinery gene
  KQ257_RS08825 (KQ257_08795) pilY2 1818699..1819181 (-) 483 WP_001046413.1 type IV pilin protein Machinery gene
  KQ257_RS08830 (KQ257_08800) pilY1 1819194..1823048 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ257_RS08835 (KQ257_08805) pilX 1823060..1823878 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ257_RS08840 (KQ257_08810) pilW 1823875..1824876 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  KQ257_RS08845 (KQ257_08815) pilV 1824877..1825437 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ257_RS08850 (KQ257_08820) fimU 1825431..1825904 (-) 474 WP_001214067.1 GspH/FimT family pseudopilin Machinery gene
  KQ257_RS08855 (KQ257_08825) ispH 1826074..1827024 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ257_RS08860 (KQ257_08830) gmk 1827147..1827776 (+) 630 WP_000015937.1 guanylate kinase -
  KQ257_RS08865 (KQ257_08835) rpoZ 1827849..1828127 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ257_RS08870 (KQ257_08840) - 1828166..1828296 (+) 131 Protein_1736 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=578221 KQ257_RS08835 WP_000149377.1 1823060..1823878(-) (pilX) [Acinetobacter baumannii strain UC24137]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=578221 KQ257_RS08835 WP_000149377.1 1823060..1823878(-) (pilX) [Acinetobacter baumannii strain UC24137]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989