Detailed information NTG0578207

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KQ256_RS19150
• Genome accession: NZ_CP076814
• Coordinates: 3512998..3513858 (+)
• Length: 286 a.a.
• NCBI ID: WP_004748468.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain UC21460
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3507998..3518858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ256_RS16805 (KQ256_16805)	secG	3508603..3508932 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
KQ256_RS16810 (KQ256_16810)	tpiA	3508945..3509739 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
KQ256_RS16815 (KQ256_16815)	pilB	3510030..3511742 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KQ256_RS16820 (KQ256_16820)	pilC	3511772..3512998 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
KQ256_RS19150 (KQ256_16825)	pilD	3512998..3513858 (+)	861	WP_004748468.1	A24 family peptidase	Machinery gene
KQ256_RS16835 (KQ256_16830)	coaE	3513860..3514456 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
KQ256_RS16840 (KQ256_16835)	-	3514453..3515367 (-)	915	WP_000075015.1	DMT family transporter	-
KQ256_RS16845 (KQ256_16840)	rlmB	3515403..3516152 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KQ256_RS16850 (KQ256_16845)	-	3516254..3516580 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KQ256_RS16855 (KQ256_16850)	-	3516657..3517967 (-)	1311	WP_109433651.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.40 Da
• Isoelectric Point: 6.6664

>NTDB_id=578207 KQ256_RS19150 WP_004748468.1 3512998..3513858(+) (pilD) [Acinetobacter baumannii strain UC21460]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=578207 KQ256_RS19150 WP_004748468.1 3512998..3513858(+) (pilD) [Acinetobacter baumannii strain UC21460]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGACCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434