Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KQ256_RS01630 Genome accession   NZ_CP076814
Coordinates   339931..340566 (-) Length   211 a.a.
NCBI ID   WP_004745464.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334931..345566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01595 (KQ256_01595) mlaE 335267..336043 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KQ256_RS01600 (KQ256_01600) - 336043..336723 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KQ256_RS01605 (KQ256_01605) - 336750..337391 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  KQ256_RS01610 (KQ256_01610) - 337403..337690 (+) 288 WP_000250997.1 STAS domain-containing protein -
  KQ256_RS01615 (KQ256_01615) - 337760..338773 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  KQ256_RS01620 (KQ256_01620) - 338931..339512 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  KQ256_RS01625 (KQ256_01625) - 339527..339928 (+) 402 WP_004745461.1 NUDIX domain-containing protein -
  KQ256_RS01630 (KQ256_01630) comF 339931..340566 (-) 636 WP_004745464.1 phosphoribosyltransferase family protein Machinery gene
  KQ256_RS01635 (KQ256_01635) recG 340559..342604 (-) 2046 WP_004745466.1 ATP-dependent DNA helicase RecG -
  KQ256_RS01640 (KQ256_01640) - 342625..343440 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  KQ256_RS01645 (KQ256_01645) adeT2 343520..344506 (+) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24567.73 Da        Isoelectric Point: 9.5738

>NTDB_id=578173 KQ256_RS01630 WP_004745464.1 339931..340566(-) (comF) [Acinetobacter baumannii strain UC21460]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578173 KQ256_RS01630 WP_004745464.1 339931..340566(-) (comF) [Acinetobacter baumannii strain UC21460]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981