Detailed information NTG0578110

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KQ254_RS19745
• Genome accession: NZ_CP076807
• Coordinates: 219334..220194 (+)
• Length: 286 a.a.
• NCBI ID: WP_135013313.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain UC20804
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 214334..225194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ254_RS00970 (KQ254_00970)	secG	214939..215268 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
KQ254_RS00975 (KQ254_00975)	tpiA	215281..216075 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
KQ254_RS00980 (KQ254_00980)	pilB	216366..218078 (+)	1713	Protein_190	type IV-A pilus assembly ATPase PilB	-
KQ254_RS00985 (KQ254_00985)	pilC	218108..219334 (+)	1227	WP_135013311.1	type II secretion system F family protein	Machinery gene
KQ254_RS19745 (KQ254_00990)	pilD	219334..220194 (+)	861	WP_135013313.1	A24 family peptidase	Machinery gene
KQ254_RS01000 (KQ254_00995)	coaE	220196..220792 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
KQ254_RS01005 (KQ254_01000)	-	220789..221703 (-)	915	WP_000075011.1	DMT family transporter	-
KQ254_RS01010 (KQ254_01005)	rlmB	221739..222488 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KQ254_RS01015 (KQ254_01010)	-	222590..222916 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KQ254_RS01020 (KQ254_01015)	-	222993..224303 (-)	1311	WP_135013315.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32134.55 Da
• Isoelectric Point: 7.1041

>NTDB_id=578110 KQ254_RS19745 WP_135013313.1 219334..220194(+) (pilD) [Acinetobacter baumannii strain UC20804]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCSACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=578110 KQ254_RS19745 WP_135013313.1 219334..220194(+) (pilD) [Acinetobacter baumannii strain UC20804]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCTCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437