Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   L6J92_RS25620 Genome accession   NZ_CP094676
Coordinates   6021657..6022298 (-) Length   213 a.a.
NCBI ID   WP_243782157.1    Uniprot ID   -
Organism   Streptomyces sp. CB09030     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6016657..6027298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6J92_RS25590 (L6J92_25590) - 6016996..6017502 (+) 507 WP_031047582.1 HNH endonuclease -
  L6J92_RS25595 (L6J92_25595) - 6017676..6018617 (-) 942 WP_195889237.1 SPFH domain-containing protein -
  L6J92_RS25600 (L6J92_25600) - 6018848..6019279 (-) 432 WP_070387730.1 NfeD family protein -
  L6J92_RS25605 (L6J92_25605) - 6019334..6020131 (-) 798 WP_037770609.1 ABC transporter ATP-binding protein -
  L6J92_RS25610 (L6J92_25610) - 6020285..6021067 (+) 783 WP_243782156.1 hypothetical protein -
  L6J92_RS25615 (L6J92_25615) chpE 6021222..6021470 (-) 249 WP_031047593.1 chaplin ChpE -
  L6J92_RS25620 (L6J92_25620) vraR 6021657..6022298 (-) 642 WP_243782157.1 response regulator transcription factor Regulator
  L6J92_RS25625 (L6J92_25625) - 6022291..6023469 (-) 1179 WP_194278230.1 GAF domain-containing sensor histidine kinase -
  L6J92_RS25630 (L6J92_25630) - 6023702..6024397 (+) 696 WP_195889238.1 SDR family oxidoreductase -
  L6J92_RS25635 (L6J92_25635) - 6024394..6025548 (+) 1155 WP_243782158.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  L6J92_RS25640 (L6J92_25640) - 6025953..6026651 (+) 699 WP_166623814.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23023.21 Da        Isoelectric Point: 4.8810

>NTDB_id=578099 L6J92_RS25620 WP_243782157.1 6021657..6022298(-) (vraR) [Streptomyces sp. CB09030]
MADPIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELRPDVILMDVKMPGMDGVDALRRLRELDNDAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEENNSGPGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578099 L6J92_RS25620 WP_243782157.1 6021657..6022298(-) (vraR) [Streptomyces sp. CB09030]
GTGGCTGACCCGATCAAGGTGCTGCTCGTCGACGACCACCAAGTGGTCCGCCGGGGGCTGCGCACCTTCCTGGAGGTACA
GGACGACATCGAGGTCGTCGGCGAGGCCGCGGACGGCGCCGAGGGCGTCGACCGCGCCGAGGAACTGAGGCCCGACGTGA
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGTGTCGACGCGCTCCGCAGGCTCCGCGAGCTGGACAACGACGCGCGC
GTGCTGGTGGTGACCAGCTTCACCGAGCAGCGCACCGTGGTCCCCGCCCTGCGCGCGGGTGCCGCCGGCTACGTCTACAA
GGACGTCGACCCCGACGCGCTCGCGGGCGCCATCCGCTCCGTCCACGCCGGCCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTCCTGAGCCAGGAGGAGAACAACTCCGGCCCCGGCAGAGCGGGTTCCCTCACCGAACGGGAGCGAGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTGGTGCTGTCCGAGAAGACCGTGAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCGGACCGCACCCAGGCCGCCCTGTGGGCCGTACGTCACGGCGTGGCCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.667

98.592

0.46
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39