Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KQ254_RS04860 Genome accession   NZ_CP076807
Coordinates   1019568..1020203 (-) Length   211 a.a.
NCBI ID   WP_032038907.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1014568..1025203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04825 (KQ254_04805) mlaE 1014905..1015681 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KQ254_RS04830 (KQ254_04810) - 1015681..1016361 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KQ254_RS04835 (KQ254_04815) - 1016388..1017029 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  KQ254_RS04840 (KQ254_04820) - 1017041..1017328 (+) 288 WP_195204329.1 STAS domain-containing protein -
  KQ254_RS04845 (KQ254_04825) - 1017397..1018410 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  KQ254_RS04850 (KQ254_04830) - 1018568..1019149 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  KQ254_RS04855 (KQ254_04835) - 1019164..1019565 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  KQ254_RS04860 (KQ254_04840) comF 1019568..1020203 (-) 636 WP_032038907.1 phosphoribosyltransferase family protein Machinery gene
  KQ254_RS04865 (KQ254_04845) recG 1020196..1022241 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  KQ254_RS04870 (KQ254_04850) - 1022262..1023077 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  KQ254_RS04875 (KQ254_04855) adeT2 1023157..1024143 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24535.67 Da        Isoelectric Point: 9.7140

>NTDB_id=578094 KQ254_RS04860 WP_032038907.1 1019568..1020203(-) (comF) [Acinetobacter baumannii strain UC20804]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=578094 KQ254_RS04860 WP_032038907.1 1019568..1020203(-) (comF) [Acinetobacter baumannii strain UC20804]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGAGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

99.526

100

0.995
  comF Acinetobacter baumannii strain A118

99.526

100

0.995