NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KQ251_RS19825	Genome accession	NZ_CP076804
Coordinates	50335..51195 (-)	Length	286 a.a.
NCBI ID	WP_002061654.1	Uniprot ID	N9KL48
Organism	Acinetobacter baumannii strain UC24371
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 45335..56195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ251_RS00215 (KQ251_00215)	-	46226..47536 (+)	1311	WP_045901178.1	tetratricopeptide repeat protein	-
KQ251_RS00220 (KQ251_00220)	-	47613..47939 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KQ251_RS00225 (KQ251_00225)	rlmB	48041..48790 (+)	750	WP_045901180.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KQ251_RS00230 (KQ251_00230)	-	48826..49740 (+)	915	WP_000075011.1	DMT family transporter	-
KQ251_RS00235 (KQ251_00235)	coaE	49737..50333 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
KQ251_RS19825 (KQ251_00240)	pilD	50335..51195 (-)	861	WP_002061654.1	A24 family peptidase	Machinery gene
KQ251_RS00250 (KQ251_00245)	pilC	51195..52421 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
KQ251_RS00255 (KQ251_00250)	pilB	52451..54163 (-)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KQ251_RS00260 (KQ251_00255)	tpiA	54454..55248 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
KQ251_RS00265 (KQ251_00260)	secG	55261..55590 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32083.45 Da Isoelectric Point: 7.1041

                                >NTDB_id=578073 KQ251_RS19825 WP_002061654.1 50335..51195(-) (pilD) [Acinetobacter baumannii strain UC24371]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=578073 KQ251_RS19825 WP_002061654.1 50335..51195(-) (pilD) [Acinetobacter baumannii strain UC24371]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	N9KL48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0578073