Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KQ251_RS08585 Genome accession   NZ_CP076804
Coordinates   1790826..1791206 (-) Length   126 a.a.
NCBI ID   WP_045901493.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC24371     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1785826..1796206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS08555 (KQ251_08515) tadA 1785945..1786448 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  KQ251_RS08560 (KQ251_08520) - 1786455..1787579 (-) 1125 WP_012297164.1 enoyl-CoA hydratase/isomerase family protein -
  KQ251_RS08565 (KQ251_08525) ung 1787576..1788289 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  KQ251_RS08570 (KQ251_08530) - 1788340..1788936 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  KQ251_RS08575 (KQ251_08535) gspK 1789166..1790125 (-) 960 WP_045901496.1 type II secretion system minor pseudopilin GspK -
  KQ251_RS08580 (KQ251_08540) xcpW 1790125..1790826 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KQ251_RS08585 (KQ251_08545) xcpV 1790826..1791206 (-) 381 WP_045901493.1 type II secretion system minor pseudopilin GspI Machinery gene
  KQ251_RS08590 (KQ251_08550) - 1791196..1791750 (-) 555 WP_000841373.1 type II secretion system protein -
  KQ251_RS08595 (KQ251_08555) - 1791760..1792368 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KQ251_RS08600 (KQ251_08560) - 1792406..1793179 (-) 774 WP_000497298.1 TatD family hydrolase -
  KQ251_RS08605 (KQ251_08565) - 1793197..1793538 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  KQ251_RS08610 (KQ251_08570) - 1793550..1794530 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  KQ251_RS08615 (KQ251_08575) kdsB 1794542..1795303 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14005.23 Da        Isoelectric Point: 9.8004

>NTDB_id=578041 KQ251_RS08585 WP_045901493.1 1790826..1791206(-) (xcpV) [Acinetobacter baumannii strain UC24371]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNSITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=578041 KQ251_RS08585 WP_045901493.1 1790826..1791206(-) (xcpV) [Acinetobacter baumannii strain UC24371]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATAGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992