NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	KQ251_RS08580	Genome accession	NZ_CP076804
Coordinates	1790125..1790826 (-)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain UC24371
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785125..1795826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ251_RS08550 (KQ251_08510)	-	1785432..1785875 (-)	444	WP_001246675.1	SRPBCC family protein	-
KQ251_RS08555 (KQ251_08515)	tadA	1785945..1786448 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
KQ251_RS08560 (KQ251_08520)	-	1786455..1787579 (-)	1125	WP_012297164.1	enoyl-CoA hydratase/isomerase family protein	-
KQ251_RS08565 (KQ251_08525)	ung	1787576..1788289 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
KQ251_RS08570 (KQ251_08530)	-	1788340..1788936 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
KQ251_RS08575 (KQ251_08535)	gspK	1789166..1790125 (-)	960	WP_045901496.1	type II secretion system minor pseudopilin GspK	-
KQ251_RS08580 (KQ251_08540)	xcpW	1790125..1790826 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KQ251_RS08585 (KQ251_08545)	xcpV	1790826..1791206 (-)	381	WP_045901493.1	type II secretion system minor pseudopilin GspI	Machinery gene
KQ251_RS08590 (KQ251_08550)	-	1791196..1791750 (-)	555	WP_000841373.1	type II secretion system protein	-
KQ251_RS08595 (KQ251_08555)	-	1791760..1792368 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KQ251_RS08600 (KQ251_08560)	-	1792406..1793179 (-)	774	WP_000497298.1	TatD family hydrolase	-
KQ251_RS08605 (KQ251_08565)	-	1793197..1793538 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
KQ251_RS08610 (KQ251_08570)	-	1793550..1794530 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
KQ251_RS08615 (KQ251_08575)	kdsB	1794542..1795303 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=578040 KQ251_RS08580 WP_000594589.1 1790125..1790826(-) (xcpW) [Acinetobacter baumannii strain UC24371]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=578040 KQ251_RS08580 WP_000594589.1 1790125..1790826(-) (xcpW) [Acinetobacter baumannii strain UC24371]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAAGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0578040