Detailed information NTG0578027

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KQ252_RS19030
• Genome accession: NZ_CP076801
• Coordinates: 2553359..2554219 (-)
• Length: 286 a.a.
• NCBI ID: WP_002061654.1
• Uniprot ID: N9KL48
• Organism: Acinetobacter baumannii strain UC25604
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2548359..2559219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ252_RS12220 (KQ252_12200)	-	2549250..2550560 (+)	1311	WP_045901178.1	tetratricopeptide repeat protein	-
KQ252_RS12225 (KQ252_12205)	-	2550637..2550963 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KQ252_RS12230 (KQ252_12210)	rlmB	2551065..2551814 (+)	750	WP_045901180.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KQ252_RS12235 (KQ252_12215)	-	2551850..2552764 (+)	915	WP_000075011.1	DMT family transporter	-
KQ252_RS12240 (KQ252_12220)	coaE	2552761..2553357 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
KQ252_RS19030 (KQ252_12225)	pilD	2553359..2554219 (-)	861	WP_002061654.1	A24 family peptidase	Machinery gene
KQ252_RS12255 (KQ252_12230)	pilC	2554219..2555445 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
KQ252_RS12260 (KQ252_12235)	pilB	2555475..2557187 (-)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KQ252_RS12265 (KQ252_12240)	tpiA	2557478..2558272 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
KQ252_RS12270 (KQ252_12245)	secG	2558285..2558614 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32083.45 Da
• Isoelectric Point: 7.1041

>NTDB_id=578027 KQ252_RS19030 WP_002061654.1 2553359..2554219(-) (pilD) [Acinetobacter baumannii strain UC25604]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMAFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=578027 KQ252_RS19030 WP_002061654.1 2553359..2554219(-) (pilD) [Acinetobacter baumannii strain UC25604]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGCGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: N9KL48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441