Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   KQ252_RS00530 Genome accession   NZ_CP076801
Coordinates   103043..103423 (+) Length   126 a.a.
NCBI ID   WP_045901493.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC25604     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98043..108423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS00500 (KQ252_00500) kdsB 98946..99707 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQ252_RS00505 (KQ252_00505) - 99719..100699 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  KQ252_RS00510 (KQ252_00510) - 100711..101052 (+) 342 WP_001183025.1 PilZ domain-containing protein -
  KQ252_RS00515 (KQ252_00515) - 101070..101843 (+) 774 WP_000497298.1 TatD family hydrolase -
  KQ252_RS00520 (KQ252_00520) - 101881..102489 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  KQ252_RS00525 (KQ252_00525) - 102499..103053 (+) 555 WP_000841373.1 type II secretion system protein -
  KQ252_RS00530 (KQ252_00530) xcpV 103043..103423 (+) 381 WP_045901493.1 type II secretion system minor pseudopilin GspI Machinery gene
  KQ252_RS00535 (KQ252_00535) xcpW 103423..104124 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  KQ252_RS00540 (KQ252_00540) gspK 104124..105083 (+) 960 WP_045901496.1 type II secretion system minor pseudopilin GspK -
  KQ252_RS00545 (KQ252_00545) - 105313..105909 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  KQ252_RS00550 (KQ252_00550) ung 105960..106673 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  KQ252_RS00555 (KQ252_00555) - 106670..107794 (+) 1125 WP_012297164.1 enoyl-CoA hydratase/isomerase family protein -
  KQ252_RS00560 (KQ252_00560) tadA 107801..108304 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14005.23 Da        Isoelectric Point: 9.8004

>NTDB_id=577982 KQ252_RS00530 WP_045901493.1 103043..103423(+) (xcpV) [Acinetobacter baumannii strain UC25604]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNSITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=577982 KQ252_RS00530 WP_045901493.1 103043..103423(+) (xcpV) [Acinetobacter baumannii strain UC25604]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATAGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992