NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	KQ252_RS00535	Genome accession	NZ_CP076801
Coordinates	103423..104124 (+)	Length	233 a.a.
NCBI ID	WP_000594589.1	Uniprot ID	A0A9P3CZ31
Organism	Acinetobacter baumannii strain UC25604
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 98423..109124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ252_RS00500 (KQ252_00500)	kdsB	98946..99707 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KQ252_RS00505 (KQ252_00505)	-	99719..100699 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
KQ252_RS00510 (KQ252_00510)	-	100711..101052 (+)	342	WP_001183025.1	PilZ domain-containing protein	-
KQ252_RS00515 (KQ252_00515)	-	101070..101843 (+)	774	WP_000497298.1	TatD family hydrolase	-
KQ252_RS00520 (KQ252_00520)	-	101881..102489 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KQ252_RS00525 (KQ252_00525)	-	102499..103053 (+)	555	WP_000841373.1	type II secretion system protein	-
KQ252_RS00530 (KQ252_00530)	xcpV	103043..103423 (+)	381	WP_045901493.1	type II secretion system minor pseudopilin GspI	Machinery gene
KQ252_RS00535 (KQ252_00535)	xcpW	103423..104124 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KQ252_RS00540 (KQ252_00540)	gspK	104124..105083 (+)	960	WP_045901496.1	type II secretion system minor pseudopilin GspK	-
KQ252_RS00545 (KQ252_00545)	-	105313..105909 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
KQ252_RS00550 (KQ252_00550)	ung	105960..106673 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
KQ252_RS00555 (KQ252_00555)	-	106670..107794 (+)	1125	WP_012297164.1	enoyl-CoA hydratase/isomerase family protein	-
KQ252_RS00560 (KQ252_00560)	tadA	107801..108304 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
KQ252_RS00565 (KQ252_00565)	-	108374..108817 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468

                                >NTDB_id=577983 KQ252_RS00535 WP_000594589.1 103423..104124(+) (xcpW) [Acinetobacter baumannii strain UC25604]

MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=577983 KQ252_RS00535 WP_000594589.1 103423..104124(+) (xcpW) [Acinetobacter baumannii strain UC25604]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGACCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAAGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996

Detailed information NTG0577983