Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KRO89_RS18935 Genome accession   NZ_CP076742
Coordinates   3923839..3925260 (+) Length   473 a.a.
NCBI ID   WP_000840544.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-705     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3918839..3930260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRO89_RS18915 (KRO89_18810) thrC 3919095..3920234 (+) 1140 WP_000063593.1 threonine synthase -
  KRO89_RS18920 (KRO89_18815) pbpG 3920341..3921387 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  KRO89_RS18925 (KRO89_18820) - 3921600..3922235 (+) 636 WP_000633799.1 response regulator -
  KRO89_RS18930 (KRO89_18825) pilS 3922246..3923814 (+) 1569 WP_005129877.1 PAS domain-containing sensor histidine kinase Regulator
  KRO89_RS18935 (KRO89_18830) pilR 3923839..3925260 (+) 1422 WP_000840544.1 sigma-54 dependent transcriptional regulator Regulator
  KRO89_RS18940 (KRO89_18835) - 3925264..3926448 (-) 1185 WP_000939109.1 S41 family peptidase -
  KRO89_RS18945 (KRO89_18840) gpmI 3926464..3928011 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  KRO89_RS18950 (KRO89_18845) lptG 3928137..3929207 (-) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53153.34 Da        Isoelectric Point: 6.6690

>NTDB_id=577980 KRO89_RS18935 WP_000840544.1 3923839..3925260(+) (pilR) [Acinetobacter baumannii strain X4-705]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKLEHDATENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDTTIDISHLHPAPLRANISNPFVSATQN
IQTTVAAPQVVKKLPSEGLERYLENIEKDILINALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=577980 KRO89_RS18935 WP_000840544.1 3923839..3925260(+) (pilR) [Acinetobacter baumannii strain X4-705]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAACTAGAGCATGATGCTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATCCGGCCCGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATA
CCACTATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGTTTCGGCTACTCAAAAC
ATACAAACCACTGTGGCGGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTAATCAATGCCCTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGATTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

97.886

100

0.979
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495